ENSG00000125676


Homo sapiens

Features
Gene ID: ENSG00000125676
  
Biological name :THOC2
  
Synonyms : Q8NI27 / THOC2 / THO complex 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q25
Gene start: 123600561
Gene end: 123733056
  
Corresponding Affymetrix probe sets: 212994_at (Human Genome U133 Plus 2.0 Array)   222122_s_at (Human Genome U133 Plus 2.0 Array)   226626_at (Human Genome U133 Plus 2.0 Array)   226628_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000415947
Ensembl peptide - ENSP00000415374
Ensembl peptide - ENSP00000416639
Ensembl peptide - ENSP00000480478
Ensembl peptide - ENSP00000419795
Ensembl peptide - ENSP00000245838
Ensembl peptide - ENSP00000347959
Ensembl peptide - ENSP00000397317
Ensembl peptide - ENSP00000402168
Ensembl peptide - ENSP00000415211
Ensembl peptide - ENSP00000415244
NCBI entrez gene - 57187     See in Manteia.
OMIM - 300395
RefSeq - XM_017029679
RefSeq - XM_017029669
RefSeq - XM_017029670
RefSeq - XM_017029671
RefSeq - XM_017029672
RefSeq - XM_017029673
RefSeq - XM_017029674
RefSeq - XM_017029675
RefSeq - XM_017029676
RefSeq - XM_017029677
RefSeq - XM_017029678
RefSeq - NM_001081550
RefSeq - XM_005262450
RefSeq - XM_017029662
RefSeq - XM_017029663
RefSeq - XM_017029664
RefSeq - XM_017029665
RefSeq - XM_017029666
RefSeq - XM_017029667
RefSeq - XM_017029668
RefSeq Peptide - NP_001075019
swissprot - B7ZB98
swissprot - F2Z2V2
swissprot - H0Y594
swissprot - H0Y7U4
swissprot - H0Y815
swissprot - H7C477
swissprot - A0A0C4DG98
swissprot - B7ZBA0
swissprot - Q8NI27
Ensembl - ENSG00000125676
  
Related genetic diseases (OMIM): 300957 - Mental retardation, X-linked 12/35, 300957
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thoc2ENSDARG00000037503Danio rerio
 THOC2ENSGALG00000008507Gallus gallus
 Thoc2ENSMUSG00000037475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021418  THO complex, subunitTHOC2, C-terminal
 IPR021726  THO complex, subunitTHOC2, N-terminal
 IPR032302  THO complex subunit 2, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0001824 blastocyst development IEA
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010793 regulation of mRNA export from nucleus IEA
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IDA
 biological_processGO:0017145 stem cell division IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0046784 viral mRNA export from host cell nucleus IDA
 biological_processGO:0048666 neuron development IMP
 biological_processGO:0048699 generation of neurons IMP
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex IDA
 cellular_componentGO:0000347 THO complex IDA
 cellular_componentGO:0000445 THO complex part of transcription export complex IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
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 HP:0002171 Gliosis 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0030260 Microphallus "Length of penis more than 2 SD below the mean for age accompanied by hypospadias." [HPO:probinson, pmid:23650202]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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