ENSG00000131652


Homo sapiens

Features
Gene ID: ENSG00000131652
  
Biological name :THOC6
  
Synonyms : Q86W42 / THOC6 / THO complex 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.3
Gene start: 3024027
Gene end: 3027755
  
Corresponding Affymetrix probe sets: 218848_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000253952
Ensembl peptide - ENSP00000326531
Ensembl peptide - ENSP00000458295
Ensembl peptide - ENSP00000460015
NCBI entrez gene - 79228     See in Manteia.
OMIM - 615403
RefSeq - NM_001347703
RefSeq - NM_001142350
RefSeq - NM_001347704
RefSeq - NM_024339
RefSeq Peptide - NP_001135822
RefSeq Peptide - NP_001334632
RefSeq Peptide - NP_001334633
RefSeq Peptide - NP_077315
swissprot - Q86W42
Ensembl - ENSG00000131652
  
Related genetic diseases (OMIM): 613680 - Beaulieu-Boycott-Innes syndrome, 613680
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thoc6ENSDARG00000037966Danio rerio
 Thoc6ENSMUSG00000041319Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007417 central nervous system development IMP
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0046784 viral mRNA export from host cell nucleus IDA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex IDA
 cellular_componentGO:0000347 THO complex IDA
 cellular_componentGO:0000445 THO complex part of transcription export complex IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000545 Myopia 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000670 Carious teeth 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001999 Facial dysmorphism 
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 HP:0003189 Long nose 
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 HP:0009765 Columella, low hanging "Columella extending inferior to the level of the nasal base, when viewed from the side." [pmid:19152422]
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 HP:0009890 High frontal hairline "An abnormally high hairline (border between forehead and scalp hair)." [HPO:curators]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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 HP:0030127 Endometriosis "The growth of endometrial tissue outside the uterus." [HPO:probinson, pmid:25221341]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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