ENSG00000137338


Homo sapiens

Features
Gene ID: ENSG00000137338
  
Biological name :PGBD1
  
Synonyms : PGBD1 / piggyBac transposable element derived 1 / Q96JS3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p22.1
Gene start: 28281572
Gene end: 28302549
  
Corresponding Affymetrix probe sets: 235411_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000259883
NCBI entrez gene - 84547     See in Manteia.
RefSeq - NM_032507
RefSeq - XM_017011363
RefSeq - NM_001184743
RefSeq - XM_011514944
RefSeq - XM_017011361
RefSeq - XM_017011362
RefSeq - XM_006715228
RefSeq - XM_011514942
RefSeq - XM_011514943
RefSeq Peptide - NP_115896
RefSeq Peptide - NP_001171672
swissprot - Q96JS3
Ensembl - ENSG00000137338
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Pgbd1ENSMUSG00000055313Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PGBD2 / Q6P3X8 / piggyBac transposable element derived 2ENSG0000018522032
PGBD4 / Q96DM1 / piggyBac transposable element derived 4ENSG0000018240513


Protein motifs (from Interpro)
Interpro ID Name
 IPR001190  SRCR domain
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR029526  PiggyBac transposable element-derived protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr