ENSG00000140471


Homo sapiens

Features
Gene ID: ENSG00000140471
  
Biological name :LINS1
  
Synonyms : lines homolog 1 / LINS1 / Q8NG48
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q26.3
Gene start: 100559369
Gene end: 100603230
  
Corresponding Affymetrix probe sets: 1554455_at (Human Genome U133 Plus 2.0 Array)   1554456_a_at (Human Genome U133 Plus 2.0 Array)   220121_at (Human Genome U133 Plus 2.0 Array)   228348_at (Human Genome U133 Plus 2.0 Array)   231976_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000474128
Ensembl peptide - ENSP00000454929
Ensembl peptide - ENSP00000454985
Ensembl peptide - ENSP00000318423
Ensembl peptide - ENSP00000452941
Ensembl peptide - ENSP00000453495
Ensembl peptide - ENSP00000453642
Ensembl peptide - ENSP00000453692
Ensembl peptide - ENSP00000454200
NCBI entrez gene - 55180     See in Manteia.
OMIM - 610350
RefSeq - XM_017022400
RefSeq - NM_001040616
RefSeq - XM_005254941
RefSeq - XM_005254943
RefSeq - XM_017022398
RefSeq Peptide - NP_001035706
swissprot - H0YKU3
swissprot - Q8NG48
swissprot - S4R3B7
swissprot - H0YM78
swissprot - H0YMK4
swissprot - H0YMQ0
swissprot - H3BNS6
swissprot - H3BNM9
Ensembl - ENSG00000140471
  
Related genetic diseases (OMIM): 614340 - Mental retardation, autosomal recessive 27, 614340
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lins1ENSDARG00000086879Danio rerio
 LINS1ENSGALG00000007112Gallus gallus
 1 ENSMUSG00000053091Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024875  Protein Lines
 IPR029415  Protein Lines, C-terminal
 IPR032794  Protein Lines, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050890 cognition IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0002465 Poor speech 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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