ENSG00000145220


Homo sapiens

Features
Gene ID: ENSG00000145220
  
Biological name :LYAR
  
Synonyms : Ly1 antibody reactive / LYAR / Q9NX58
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: p16.3
Gene start: 4267701
Gene end: 4290169
  
Corresponding Affymetrix probe sets: 223413_s_at (Human Genome U133 Plus 2.0 Array)   223414_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000420902
Ensembl peptide - ENSP00000345917
Ensembl peptide - ENSP00000397367
NCBI entrez gene - 55646     See in Manteia.
OMIM - 617684
RefSeq - XM_011513506
RefSeq - NM_001145725
RefSeq - NM_017816
RefSeq - XM_011513505
RefSeq Peptide - NP_060286
RefSeq Peptide - NP_001139197
swissprot - Q9NX58
swissprot - D6RDJ1
Ensembl - ENSG00000145220
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lyarENSDARG00000098507Danio rerio
 LYARENSGALG00000015000Gallus gallus
 LyarENSMUSG00000067367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014898  Zinc finger, C2H2, LYAR-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0048821 erythrocyte development IMP
 biological_processGO:0050766 positive regulation of phagocytosis ISS
 cellular_componentGO:0001750 photoreceptor outer segment ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr