ENSG00000145982


Homo sapiens

Features
Gene ID: ENSG00000145982
  
Biological name :FARS2
  
Synonyms : FARS2 / O95363 / phenylalanyl-tRNA synthetase 2, mitochondrial
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p25.1
Gene start: 5261044
Gene end: 5771580
  
Corresponding Affymetrix probe sets: 204282_s_at (Human Genome U133 Plus 2.0 Array)   204283_at (Human Genome U133 Plus 2.0 Array)   215414_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000274680
Ensembl peptide - ENSP00000316335
Ensembl peptide - ENSP00000392525
Ensembl peptide - ENSP00000473394
NCBI entrez gene - 10667     See in Manteia.
OMIM - 611592
RefSeq - XM_017010187
RefSeq - NM_001318872
RefSeq - NM_006567
RefSeq - XM_006714966
RefSeq - XM_011514247
RefSeq - XM_011514248
RefSeq - XM_011514249
RefSeq - XM_017010186
RefSeq - XM_005248812
RefSeq Peptide - NP_006558
RefSeq Peptide - NP_001305801
swissprot - O95363
swissprot - Q5JRF7
swissprot - R4GMX6
Ensembl - ENSG00000145982
  
Related genetic diseases (OMIM): 614946 - Combined oxidative phosphorylation deficiency 14, 614946
  617046 - Spastic paraplegia 77, autosomal recessive, 617046
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fars2ENSDARG00000091247Danio rerio
 FARS2ENSGALG00000042481Gallus gallus
 Fars2ENSMUSG00000021420Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BRP7 / FDXACB1 / ferredoxin-fold anticodon binding domain containing 1ENSG0000025556116


Protein motifs (from Interpro)
Interpro ID Name
 IPR002319  Phenylalanyl-tRNA synthetase
 IPR004530  Phenylalanyl-tRNA synthetase, class IIc, mitochondrial
 IPR005121  Ferrodoxin-fold anticodon-binding domain
 IPR006195  Aminoacyl-tRNA synthetase, class II
 IPR036690  Ferrodoxin-fold anticodon-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation TAS
 biological_processGO:0006432 phenylalanyl-tRNA aminoacylation IEA
 biological_processGO:0008033 tRNA processing IDA
 biological_processGO:0043039 tRNA aminoacylation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004826 phenylalanine-tRNA ligase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
Mitochondrial tRNA aminoacylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000505 Impaired vision 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001258 Spastic paraplegia 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001873 Thrombocytopenia 
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 HP:0001903 Anemia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002119 Ventriculomegaly 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002171 Gliosis 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003828 Variable expressivity 
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 HP:0007210 Lower limb hypotrophy 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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