ENSG00000155858


Homo sapiens

Features
Gene ID: ENSG00000155858
  
Biological name :LSM11
  
Synonyms : LSM11 / LSM11, U7 small nuclear RNA associated / P83369
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q33.3
Gene start: 157743695
Gene end: 157760709
  
Corresponding Affymetrix probe sets: 226819_at (Human Genome U133 Plus 2.0 Array)   226826_at (Human Genome U133 Plus 2.0 Array)   241599_at (Human Genome U133 Plus 2.0 Array)   242112_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000286307
NCBI entrez gene - 134353     See in Manteia.
RefSeq - NM_173491
RefSeq Peptide - NP_775762
swissprot - P83369
Ensembl - ENSG00000155858
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm11ENSDARG00000090854Danio rerio
 LSM11ENSGALG00000038954Gallus gallus
 Lsm11ENSMUSG00000044847Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034109  Sm-like protein Lsm11, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IEA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IDA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0071209 U7 snRNA binding IDA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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