ENSG00000163933


Homo sapiens

Features
Gene ID: ENSG00000163933
  
Biological name :RFT1
  
Synonyms : Q96AA3 / RFT1 / RFT1 homolog
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.1
Gene start: 53088483
Gene end: 53130462
  
Corresponding Affymetrix probe sets: 1558289_at (Human Genome U133 Plus 2.0 Array)   226060_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000378223
Ensembl peptide - ENSP00000420325
Ensembl peptide - ENSP00000296292
NCBI entrez gene - 91869     See in Manteia.
OMIM - 611908
RefSeq - XM_017007461
RefSeq - XM_011534214
RefSeq - XM_011534215
RefSeq - XM_011534216
RefSeq - XM_017007460
RefSeq - NM_052859
RefSeq - XM_005265537
RefSeq - XM_006713384
RefSeq Peptide - NP_443091
swissprot - C9JP01
swissprot - B5MDE0
swissprot - Q96AA3
Ensembl - ENSG00000163933
  
Related genetic diseases (OMIM): 612015 - Congenital disorder of glycosylation, type In, 612015
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rft1ENSDARG00000060398Danio rerio
 RFT1ENSGALG00000001945Gallus gallus
 Rft1ENSMUSG00000052395Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC096887.1ENSG0000027230520


Protein motifs (from Interpro)
Interpro ID Name
 IPR007594  RFT1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0008643 carbohydrate transport IEA
 biological_processGO:0034203 glycolipid translocation IBA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005319 lipid transporter activity IEA


Pathways (from Reactome)
Pathway description
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
Defective RFT1 causes RFT1-CDG (CDG-1n)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000470 Short neck 
Show

 HP:0000505 Impaired vision 
Show

 HP:0000932 Abnormality of the posterior cranial fossa "An abnormality of the fossa cranii posterior (the posterior fossa), which is made up primarily of the occipital bone and which surrounds to the foramen magnum." [HPO:curators]
Show

 HP:0001181 Adducted thumbs 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001892 Bleeding diathesis "An abnormal susceptibility to bleeding because of a defect in coagulation." [HPO:curators]
Show

 HP:0001928 Abnormality of coagulation 
Show

 HP:0001977 Thrombosis 
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002401 Stroke-like episodes 
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0003160 Abnormal isoelectric focusing of serum transferrin 
Show

 HP:0003186 Inverted nipples "The presence of nipples that instead of pointing outward are retracted inwards." [HPO:sdoelken]
Show

 HP:0003256 Abnormalities of the clotting factors 
Show

 HP:0003593 Early onset 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0007146 Bilateral basal ganglia lesions 
Show

 HP:0007663 Decreased central vision 
Show

 HP:0008081 Valgus foot deformity 
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0030890 Hyperintensity of cerebral white matter on MRI "A brighter than expected signal on magnetic resonance imaging emanating from the cerebral white matter." [PMID:15576652]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr