ENSG00000164197


Homo sapiens

Features
Gene ID: ENSG00000164197
  
Biological name :RNF180
  
Synonyms : Q86T96 / ring finger protein 180 / RNF180
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q12.3
Gene start: 64165844
Gene end: 64372869
  
Corresponding Affymetrix probe sets: 236644_at (Human Genome U133 Plus 2.0 Array)   242033_at (Human Genome U133 Plus 2.0 Array)   242985_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000426884
Ensembl peptide - ENSP00000296615
Ensembl peptide - ENSP00000373752
NCBI entrez gene - 285671     See in Manteia.
OMIM - 616015
RefSeq - XM_017009389
RefSeq - NM_001113561
RefSeq - NM_001323291
RefSeq - NM_001323292
RefSeq - NM_178532
RefSeq - XM_017009383
RefSeq - XM_017009384
RefSeq - XM_017009385
RefSeq - XM_017009386
RefSeq - XM_017009387
RefSeq - XM_017009388
RefSeq Peptide - NP_001107033
RefSeq Peptide - NP_001310220
RefSeq Peptide - NP_001310221
RefSeq Peptide - NP_848627
swissprot - Q86T96
swissprot - D6RE88
Ensembl - ENSG00000164197
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf180ENSDARG00000057101Danio rerio
 RNF180ENSDARG00000073720Danio rerio
 RNF180ENSGALG00000014743Gallus gallus
 Q3U827ENSMUSG00000021720Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR033263  E3 ubiquitin-protein ligase RNF180


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030534 adult behavior IBA
 biological_processGO:0031398 positive regulation of protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0042415 norepinephrine metabolic process IBA
 biological_processGO:0042428 serotonin metabolic process IBA
 biological_processGO:0050790 regulation of catalytic activity IEA
 biological_processGO:1901360 organic cyclic compound metabolic process IEA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031227 intrinsic component of endoplasmic reticulum membrane IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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