ENSG00000166685


Homo sapiens

Features
Gene ID: ENSG00000166685
  
Biological name :COG1
  
Synonyms : COG1 / component of oligomeric golgi complex 1 / Q8WTW3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.1
Gene start: 73192632
Gene end: 73208507
  
Corresponding Affymetrix probe sets: 227784_s_at (Human Genome U133 Plus 2.0 Array)   230878_s_at (Human Genome U133 Plus 2.0 Array)   231813_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000462709
Ensembl peptide - ENSP00000463298
Ensembl peptide - ENSP00000479450
Ensembl peptide - ENSP00000463696
Ensembl peptide - ENSP00000299886
Ensembl peptide - ENSP00000400111
Ensembl peptide - ENSP00000462101
NCBI entrez gene - 9382     See in Manteia.
OMIM - 606973
RefSeq - NM_018714
RefSeq Peptide - NP_061184
swissprot - J3KRP4
swissprot - J3KSY3
swissprot - J3QKY9
swissprot - J3QLT5
swissprot - E9PBL8
swissprot - Q8WTW3
swissprot - A0A087WVI0
Ensembl - ENSG00000166685
  
Related genetic diseases (OMIM): 611209 - Congenital disorder of glycosylation, type IIg, 611209
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cog1ENSDARG00000105131Danio rerio
 COG1ENSGALG00000029893Gallus gallus
 Cog1ENSMUSG00000018661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR033370  Conserved oligomeric Golgi complex subunit 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport TAS
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IEA
 biological_processGO:0007030 Golgi organization NAS
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0017119 Golgi transport complex IEA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000319 Flat philtrum 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0003160 Abnormal isoelectric focusing of serum transferrin 
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 HP:0003316 Butterfly vertebrae 
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 HP:0003422 Vertebral segmentation defects 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008905 Rhizomelic short stature 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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