ENSG00000168827


Homo sapiens

Features
Gene ID: ENSG00000168827
  
Biological name :GFM1
  
Synonyms : G elongation factor mitochondrial 1 / GFM1 / Q96RP9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q25.32
Gene start: 158644278
Gene end: 158692575
  
Corresponding Affymetrix probe sets: 220903_at (Human Genome U133 Plus 2.0 Array)   225153_at (Human Genome U133 Plus 2.0 Array)   225158_at (Human Genome U133 Plus 2.0 Array)   225161_at (Human Genome U133 Plus 2.0 Array)   232295_at (Human Genome U133 Plus 2.0 Array)   232296_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419038
Ensembl peptide - ENSP00000417225
Ensembl peptide - ENSP00000420272
Ensembl peptide - ENSP00000417532
Ensembl peptide - ENSP00000418755
Ensembl peptide - ENSP00000264263
NCBI entrez gene - 85476     See in Manteia.
OMIM - 606639
RefSeq - XM_006713795
RefSeq - NM_001308164
RefSeq - NM_001308166
RefSeq - NM_024996
RefSeq Peptide - NP_079272
RefSeq Peptide - NP_001295093
RefSeq Peptide - NP_001295095
swissprot - C9JA25
swissprot - C9IZ01
swissprot - H7C5M4
swissprot - F8WAU4
swissprot - Q96RP9
swissprot - E5KND5
Ensembl - ENSG00000168827
  
Related genetic diseases (OMIM): 609060 - Combined oxidative phosphorylation deficiency 1, 609060
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gfm1ENSDARG00000063624Danio rerio
 GFM1ENSGALG00000009634Gallus gallus
 Gfm1ENSMUSG00000027774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000640  Elongation factor EFG, domain V-like
 IPR000795  Transcription factor, GTP-binding domain
 IPR004161  Translation elongation factor EFTu-like, domain 2
 IPR004540  Translation elongation factor EFG/EF2
 IPR005225  Small GTP-binding protein domain
 IPR005517  Translation elongation factor EFG/EF2, domain IV
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR009022  Elongation factor G, domain III
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031157  Tr-type G domain, conserved site
 IPR035647  EF-G domain III/V-like
 IPR035649  EFG, domain V


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0070125 mitochondrial translational elongation TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003746 translation elongation factor activity IDA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial translation elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001396 Cholestasis 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001942 Metabolic acidosis 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002283 Diffuse brain atrophy 
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 HP:0002375 Hypokinesia 
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004448 Fulminant hepatic failure "Hepatic failure refers to the inability of the liver to perform its normal synthetic and metabolic functions, which can result in coagulopathy and alteration in the mental status of a previously healthy individual. Hepatic failure is defined as fulminant if there is onset of encephalopathy within 4 weeks of the onset of symptoms in a patient with a previously healthy liver." [HPO:curators]
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 HP:0006799 Basal ganglia cysts 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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