ENSG00000172000


Homo sapiens

Features
Gene ID: ENSG00000172000
  
Biological name :ZNF556
  
Synonyms : Q9HAH1 / zinc finger protein 556 / ZNF556
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.3
Gene start: 2867335
Gene end: 2883445
  
Corresponding Affymetrix probe sets: 220709_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000467366
Ensembl peptide - ENSP00000302603
Ensembl peptide - ENSP00000465533
NCBI entrez gene - 80032     See in Manteia.
RefSeq - NM_024967
RefSeq - NM_001300843
RefSeq Peptide - NP_001287772
RefSeq Peptide - NP_079243
swissprot - Q9HAH1
swissprot - A0A0C4DGQ3
swissprot - K7EKA5
Ensembl - ENSG00000172000
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NEP9 / ZNF555 / zinc finger protein 555ENSG0000018630049
Q32M78 / ZNF699 / zinc finger protein 699ENSG0000019611047
ZNF77 / Q15935 / zinc finger protein 77ENSG0000017569145
ZNF57 / Q68EA5 / zinc finger protein 57ENSG0000017197044
Q9NUA8 / ZBTB40 / zinc finger and BTB domain containing 40ENSG0000018467726
ZNF788 / zinc finger family member 788ENSG0000021418925


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr