ENSG00000172288


Homo sapiens

Features
Gene ID: ENSG00000172288
  
Biological name :CDY1
  
Synonyms : CDY1 / chromodomain Y-linked 1 / Q9Y6F8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: Y
Strand: 1
Band: q11.23
Gene start: 25622162
Gene end: 25624902
  
Corresponding Affymetrix probe sets: 207646_s_at (Human Genome U133 Plus 2.0 Array)   207647_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302968
Ensembl peptide - ENSP00000354799
NCBI entrez gene - 9085     See in Manteia.
OMIM - 400016
RefSeq - XM_011531512
RefSeq - NM_004680
RefSeq - NM_170723
RefSeq Peptide - NP_733841
RefSeq Peptide - NP_004671
swissprot - Q9Y6F8
Ensembl - ENSG00000172288
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdylENSDARG00000038985Danio rerio
 ENSGALG00000012808Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDY1B / Q9Y6F8 / chromodomain Y-linked 1BENSG00000172352100
CDY2A / Q9Y6F7 / chromodomain Y-linked 2AENSG0000018241598
CDY2B / Q9Y6F7 / chromodomain Y-linked 2BENSG0000012987398
CDYL / Q9Y232 / chromodomain Y likeENSG0000015304661
CDYL2 / Q8N8U2 / chromodomain Y like 2ENSG0000016644638
ECI2 / O75521 / enoyl-CoA delta isomerase 2ENSG0000019872121
ECHS1 / P30084 / enoyl-CoA hydratase, short chain 1ENSG0000012788412
ECHDC2 / Q86YB7 / enoyl-CoA hydratase domain containing 2ENSG0000012131011
AUH / Q13825 / AU RNA binding methylglutaconyl-CoA hydrataseENSG0000014809011
ECH1 / Q13011 / enoyl-CoA hydratase 1ENSG0000010482310
ECHDC3 / Q96DC8 / enoyl-CoA hydratase domain containing 3ENSG0000013446310


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR001753  Enoyl-CoA hydratase/isomerase
 IPR014748  Enoyl-CoA hydratase, C-terminal
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR029045  ClpP/crotonase-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007283 spermatogenesis TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016573 histone acetylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004402 histone acetyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0035064 methylated histone binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000027 Azoospermia 
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 HP:0001450 Y-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the Y chromosome." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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