ENSG00000182040


Homo sapiens

Features
Gene ID: ENSG00000182040
  
Biological name :USH1G
  
Synonyms : Q495M9 / USH1G / USH1 protein network component sans
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q25.1
Gene start: 74916084
Gene end: 74923256
  
Corresponding Affymetrix probe sets: 1553263_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000462568
Ensembl peptide - ENSP00000480279
NCBI entrez gene - 124590     See in Manteia.
OMIM - 607696
RefSeq - XM_011524296
RefSeq - NM_001282489
RefSeq - NM_173477
RefSeq Peptide - NP_001269418
RefSeq Peptide - NP_775748
swissprot - Q495M9
swissprot - J3KSN5
Ensembl - ENSG00000182040
  
Related genetic diseases (OMIM): 606943 - Usher syndrome, type 1G, 606943
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ush1gaENSDARG00000004322Danio rerio
 ush1gbENSDARG00000076079Danio rerio
 USH1GENSGALG00000038769Gallus gallus
 Ush1gENSMUSG00000045288Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ANKS4B / Q8N8V4 / ankyrin repeat and sterile alpha motif domain containing 4BENSG0000017531142


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR002110  Ankyrin repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR020683  Ankyrin repeat-containing domain
 IPR033350  Usher syndrome type-1G protein
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0050953 sensory perception of light stimulus IEA
 biological_processGO:0050957 equilibrioception IEA
 biological_processGO:0060113 inner ear receptor cell differentiation IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015629 actin cytoskeleton ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030507 spectrin binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001751 Vestibular dysfunction 
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 HP:0001756 Vestibular hypofunction 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0004646 Nasal bone hypoplasia 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008499 High-grade hypermetropia 
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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