ENSG00000186472


Homo sapiens

Features
Gene ID: ENSG00000186472
  
Biological name :PCLO
  
Synonyms : PCLO / piccolo presynaptic cytomatrix protein / Q9Y6V0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.11
Gene start: 82754013
Gene end: 83162930
  
Corresponding Affymetrix probe sets: 210650_s_at (Human Genome U133 Plus 2.0 Array)   213558_at (Human Genome U133 Plus 2.0 Array)   217096_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404191
Ensembl peptide - ENSP00000397928
Ensembl peptide - ENSP00000482390
Ensembl peptide - ENSP00000334319
Ensembl peptide - ENSP00000388393
Ensembl peptide - ENSP00000393760
NCBI entrez gene - 27445     See in Manteia.
OMIM - 604918
RefSeq - XM_017012007
RefSeq - NM_014510
RefSeq - NM_033026
RefSeq - XM_017012006
RefSeq Peptide - NP_055325
RefSeq Peptide - NP_149015
swissprot - E9PE96
swissprot - H7C114
swissprot - H7C261
swissprot - Q9Y6V0
Ensembl - ENSG00000186472
  
Related genetic diseases (OMIM): 608027 - ?Pontocerebellar hypoplasia, type 3, 608027
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcloaENSDARG00000063299Danio rerio
 pclobENSDARG00000098880Danio rerio
 ENSGALG00000040151Gallus gallus
 ENSGALG00000039659Gallus gallus
 ENSGALG00000037435Gallus gallus
 PcloENSMUSG00000061601Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BSN / Q9UPA5 / bassoon presynaptic cytomatrix proteinENSG0000016406126


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001478  PDZ domain
 IPR001565  Synaptotagmin
 IPR008899  Zinc finger, piccolo-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR030629  Protein piccolo
 IPR035892  C2 domain superfamily
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization ISS
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0016079 synaptic vesicle exocytosis NAS
 biological_processGO:0017157 regulation of exocytosis IEA
 biological_processGO:0019933 cAMP-mediated signaling IEA
 biological_processGO:0030073 insulin secretion IEA
 biological_processGO:0035418 protein localization to synapse IEA
 biological_processGO:0099526 presynapse to nucleus signaling pathway IEA
 cellular_componentGO:0005856 cytoskeleton NAS
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0048786 presynaptic active zone IEA
 cellular_componentGO:0048788 cytoskeleton of presynaptic active zone TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0098831 presynaptic active zone cytoplasmic component IEA
 molecular_functionGO:0005509 calcium ion binding ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005522 profilin binding ISS
 molecular_functionGO:0005544 calcium-dependent phospholipid binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000520 Proptosis 
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 HP:0000637 Wide palpebral fissures 
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 HP:0000648 Optic atrophy 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002421 Poor head control 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0003676 Progressive disorder 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004325 Decreased body weight 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0012110 Hypoplasia of the pons "Underdevelopment of the `pons` (FMA:67943)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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