ENSG00000205413


Homo sapiens

Features
Gene ID: ENSG00000205413
  
Biological name :SAMD9
  
Synonyms : Q5K651 / SAMD9 / sterile alpha motif domain containing 9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q21.2
Gene start: 93099513
Gene end: 93118023
  
Corresponding Affymetrix probe sets: 219691_at (Human Genome U133 Plus 2.0 Array)   228531_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000369292
Ensembl peptide - ENSP00000484636
Ensembl peptide - ENSP00000414529
NCBI entrez gene - 54809     See in Manteia.
OMIM - 610456
RefSeq - NM_001193307
RefSeq - NM_017654
RefSeq Peptide - NP_001180236
RefSeq Peptide - NP_060124
swissprot - C9JKF1
swissprot - Q5K651
Ensembl - ENSG00000205413
  
Related genetic diseases (OMIM): 610455 - Tumoral calcinosis, familial, normophosphatemic, 610455
  617053 - MIRAGE syndrome, 617053
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAMD9ENSDARG00000102729Danio rerio
 ENSGALG00000009479Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8IVG5 / SAMD9L / sterile alpha motif domain containing 9 likeENSG0000017740960


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034058 endosomal vesicle fusion IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005769 early endosome IBA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000238 Hydrocephalus 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000846 Adrenal insufficiency 
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0000967 Petechiae 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001838 Vertical talus 
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 HP:0001882 Leukopenia 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002028 Chronic diarrhea 
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 HP:0002043 Esophageal stricture 
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 HP:0002153 Hyperkalemia 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0002571 Achalasia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002863 Myelodysplasia 
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 HP:0002902 Hyponatremia 
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 HP:0003761 Calcinosis "Formation of calcium deposits in any soft tissue." [HPO:curators]
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 HP:0004059 Radial club 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004325 Decreased body weight 
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 HP:0006270 Hypoplastic spleen "Underdevelopment of the spleen." [HPO:curators]
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 HP:0008734 Decreased testicular size 
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 HP:0010550 Paraplegia "Severe or complete weakness of both lower extremities with sparing of the upper extremities." [HPO:curators]
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 HP:0010557 Overlapping fingers "Overlapping of the fingers occuring as the result of a deviation of the fingers from their normal position." [HPO:curators]
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 HP:0011951 Aspiration pneumonia "Pneumonia due to the aspiration (breathing in) of food, liquid, or gastric contents into the upper respiratory tract." [HPO:probinson]
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 HP:0030260 Microphallus "Length of penis more than 2 SD below the mean for age accompanied by hypospadias." [HPO:probinson, pmid:23650202]
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 HP:0100806 Sepsis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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