ENSG00000244045


Homo sapiens

Features
Gene ID: ENSG00000244045
  
Biological name :TMEM199
  
Synonyms : Q8N511 / TMEM199 / transmembrane protein 199
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q11.2
Gene start: 28357581
Gene end: 28363683
  
Corresponding Affymetrix probe sets: 225374_at (Human Genome U133 Plus 2.0 Array)   225375_at (Human Genome U133 Plus 2.0 Array)   229182_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000292114
Ensembl peptide - ENSP00000462356
Ensembl peptide - ENSP00000465232
Ensembl peptide - ENSP00000462195
NCBI entrez gene - 147007     See in Manteia.
OMIM - 616815
RefSeq - NM_152464
RefSeq Peptide - NP_689677
swissprot - Q8N511
swissprot - J3KRW7
swissprot - J3KS81
swissprot - K7EJL8
Ensembl - ENSG00000244045
  
Related genetic diseases (OMIM): 616829 - Congenital disorder of glycosylation, type IIp, 616829
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmem199ENSDARG00000069314Danio rerio
 TMEM199ENSGALG00000023757Gallus gallus
 Q5SYH2ENSMUSG00000051232Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021013  ATPase, vacuolar ER assembly factor, Vma12


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006879 cellular iron ion homeostasis IMP
 biological_processGO:0007042 lysosomal lumen acidification IMP
 biological_processGO:0036295 cellular response to increased oxygen levels IMP
 biological_processGO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEA
 biological_processGO:1905146 lysosomal protein catabolic process IMP
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016471 vacuolar proton-transporting V-type ATPase complex IDA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001397 Hepatic steatosis 
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 HP:0001410 Decreased liver function 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003124 Hypercholesterolemia 
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 HP:0003141 Increased beta-lipoproteins "An increase in the blood concentration of beta lipoprotein, which is a low-density lipoprotein involved in the blood transport of cholesterol." [HPO:curators]
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0010837 Decreased serum ceruloplasmin "A kind of `Abnormality of copper homeostasis` (HP:0010836) related to a `decreased concentration` (PATO:0001163) of `ceruloplasmin` (PR:000005794) in the `blood` (FMA:9670)." [HPO:probinson]
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 HP:0012347 Abnormal protein N-linked glycosylation "An anomaly of `protein N-linked glycosylation` (GO:0006487), i.e., an abnormality of the protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via a nitrogen atom in an amino acid residue in a protein." [HPO:probinson, pmid:22516080]
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 HP:0012358 Abnormal protein O-linked glycosylation "An anomaly of `protein O-linked glycosylation` (GO:0006493), i.e., of the process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of a serine or threonine residue." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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