ENSGALG00000002837


Gallus gallus

Features
Gene ID: ENSGALG00000002837
  
Biological name :RPL27
  
Synonyms : 60S ribosomal protein L27 / P61355 / RPL27
  
Possible biological names infered from orthology : P61353 / P61358 / ribosomal protein L27 / ribosomal protein L27, pseudogene 3 / Rpl27-ps3
  
Species: Gallus gallus
  
Chr. number: 27
Strand: 1
Band:
Gene start: 5522072
Gene end: 5524344
  
Corresponding Affymetrix probe sets: Gga.15883.1.S1_at (Chicken Array)   Gga.743.1.S1_s_at (Chicken Array)   GgaAffx.20503.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044547
Ensembl peptide - ENSGALP00000063058
Ensembl peptide - ENSGALP00000062291
Ensembl peptide - ENSGALP00000061578
Ensembl peptide - ENSGALP00000061366
Ensembl peptide - ENSGALP00000059679
Ensembl peptide - ENSGALP00000059378
Ensembl peptide - ENSGALP00000038957
NCBI entrez gene - 396280     See in Manteia.
RefSeq - NM_205337
RefSeq - XM_015299594
RefSeq Peptide - NP_990668
swissprot - A0A1L1RRD6
swissprot - A0A1L1RLQ0
swissprot - A0A1L1RW37
swissprot - P61355
swissprot - A0A1L1RKT9
swissprot - A0A1L1RTZ2
swissprot - A0A1L1RRZ8
Ensembl - ENSGALG00000002837
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX901883.4ENSDARG00000113664Danio rerio
 RPL27ENSG00000131469Homo sapiens
 P61358ENSMUSG00000073640Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001141  Ribosomal protein L27e
 IPR005824  KOW
 IPR008991  Translation protein SH3-like domain superfamily
 IPR014722  Ribosomal protein L2, domain 2
 IPR018262  Ribosomal protein L27e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit ISS
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane ISS
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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