ENSGALG00000006841


Gallus gallus

Features
Gene ID: ENSGALG00000006841
  
Biological name :POLR2L
  
Synonyms : POLR2L / RNA polymerase II subunit L
  
Possible biological names infered from orthology : DNA-directed RNA polymerases I, II, and III subunit RPABC5 / P62875 / P62876
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 15663765
Gene end: 15665176
  
Corresponding Affymetrix probe sets: Gga.9283.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038267
NCBI entrez gene - 770704     See in Manteia.
RefSeq - NM_001302172
RefSeq Peptide - NP_001289101
swissprot - E1BSY6
Ensembl - ENSGALG00000006841
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr2lENSDARG00000058349Danio rerio
 P62875ENSG00000177700Homo sapiens
 P62876ENSMUSG00000038489Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000268  DNA-directed RNA polymerase, subunit N/Rpb10
 IPR009057  Homeobox-like domain superfamily
 IPR020789  RNA polymerases, subunit N, zinc binding site
 IPR023580  RNA polymerase subunit RPB10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0001055 RNA polymerase II activity IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IBA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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