ENSGALG00000025643


Gallus gallus

Features
Gene ID: ENSGALG00000025643
  
Biological name :RF00001
  
Synonyms : RF00001
  
Possible biological names infered from orthology : Gm23997 / Gm25555 / n-R5s213 / n-R5s29 / nuclear encoded rRNA 5S 213 / nuclear encoded rRNA 5S 29 / predicted gene, 23997 / predicted gene, 25555 / RNA5SP155 / RNA5SP174 / RNA5SP190 / RNA5SP242 / RNA5SP283 / RNA5SP284 / RNA5SP286 / RNA5SP519 / RNA5SP528 / RNA5SP530 / RNA5SP532 / RNA, 5S ribosomal pseudogene 155 / RNA, 5S ribosomal pseudogene 174 / RNA, 5S ribosomal pseudogene 190 / RNA, 5S ribosomal pseudogene 242 / RNA, 5S ribosomal pseudogene 283 / RNA, 5S ribosomal pseudogene 284 / RNA, 5S ribosomal pseudogene 286 / RNA, 5S ribosomal pseudogene 519 / RNA, 5S ribosomal pseudogene 528 / RNA, 5S ribosomal pseudogene 530 / RNA, 5S ribosomal pseudogene 532
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 20074892
Gene end: 20074989
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl - ENSGALG00000025643
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RF00001ENSDARG00000080918Danio rerio
 RNA5SP155ENSG00000223086Homo sapiens
 RNA5SP174ENSG00000199572Homo sapiens
 RNA5SP190ENSG00000202092Homo sapiens
 RNA5SP242ENSG00000201041Homo sapiens
 RNA5SP283ENSG00000202474Homo sapiens
 RNA5SP284ENSG00000207277Homo sapiens
 RNA5SP286ENSG00000212454Homo sapiens
 RNA5SP519ENSG00000252289Homo sapiens
 RNA5SP528ENSG00000275305Homo sapiens
 RNA5SP530ENSG00000277049Homo sapiens
 RNA5SP532ENSG00000283433Homo sapiens
 Gm23997ENSMUSG00000088680Mus musculus
 Gm25555ENSMUSG00000088703Mus musculus
 n-R5s213ENSMUSG00000065055Mus musculus
 n-R5s29ENSMUSG00000064770Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003706970
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003908269
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003557069
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003802869
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003984769
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000004055469
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003533369
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000002960969
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000004327969
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000004084669
RF00001 / n-R5s92* / RNA5SP352* / nuclear encoded rRNA 5S 92* / RNA, 5S ribosomal pseudogene 352*ENSGALG0000001779068
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000001779267
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000004269066
RF00001 / RNA5SP175* / RNA5SP518* / RNA, 5S ribosomal pseudogene 175* / RNA, 5S ribosomal pseudogene 518*ENSGALG0000003960165
RF00001 / n-R5s77* / nuclear encoded rRNA 5S 77*ENSGALG0000003528364
RF00001 / n-R5s65* / RNA5SP59* / RNA5SP78* / RNA5SP154* / RNA5SP384* / RNA5SP388* / RNA5SP529* / RNA5SP533* / RNA5SP100* / nuclear encoded rRNA 5S 65* / RNA, 5S ribosomal pseudogene 78* / R...ENSGALG0000001778964
RF00001 / RNA5SP362* / RNA, 5S ribosomal pseudogene 362*ENSGALG0000002532961
RF00001ENSGALG0000002548454
RF00001 / n-R5s41* / RNA5SP53* / nuclear encoded rRNA 5S 41* / RNA, 5S ribosomal pseudogene 53*ENSGALG0000002547251
RF00001 / Gm25554* / RNA5SP531* / predicted gene, 25554* / RNA, 5S ribosomal pseudogene 531*ENSGALG0000002493351


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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