ENSMUSG00000001333


Mus musculus

Features
Gene ID: ENSMUSG00000001333
  
Biological name :Sync
  
Synonyms : Q9EPM5 / Sync / syncoilin
  
Possible biological names infered from orthology : Q9H7C4 / syncoilin, intermediate filament protein
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D2.2
Gene start: 129287617
Gene end: 129308559
  
Corresponding Affymetrix probe sets: 10508436 (MoGene1.0st)   1422118_at (Mouse Genome 430 2.0 Array)   1432349_a_at (Mouse Genome 430 2.0 Array)   1432350_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099659
NCBI entrez gene - 68828     See in Manteia.
MGI - MGI:1916078
RefSeq - XM_006503374
RefSeq - NM_023485
RefSeq - XM_006503373
RefSeq Peptide - NP_075974
swissprot - Q9EPM5
swissprot - C0LQ89
Ensembl - ENSMUSG00000001333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syncENSDARG00000035944Danio rerio
 SYNCENSGALG00000003529Gallus gallus
 SYNCENSG00000162520Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR027702  Syncoilin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045103 intermediate filament-based process IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005882 intermediate filament ISS
 cellular_componentGO:0030018 Z disc IDA
 cellular_componentGO:0031594 neuromuscular junction IDA
 cellular_componentGO:0042383 sarcolemma IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002106 abnormal muscle physiology "anomolous function of the muscle, not due to an anatomical defect" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Ptentm1.1Mro/Ptentm1.1Mro
Genetic Background: involves: BALB/cJ

 MP:0002841 impaired skeletal muscle contractility "inability or reduced ability of the skeletal muscle to shorten or to develop increased tension" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
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Allelic Composition: Cd79atm2Cgn/Cd79atm2Cgn,Cd79btm2.1Mnz/Cd79btm2.1Mnz
Genetic Background: involves: 129/Sv * C57BL/6

 MP:0010090 increased circulating creatine kinase level "an elevation in the concentration in the blood of an enzyme that catalyzes the reversible transfer of creatine to phosphocreatine" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Cd79atm2Cgn/Cd79atm2Cgn,Cd79btm2.1Mnz/Cd79btm2.1Mnz
Genetic Background: involves: 129/Sv * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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