ENSMUSG00000006423


Mus musculus

Features
Gene ID: ENSMUSG00000006423
  
Biological name :C330007P06Rik
  
Synonyms : C330007P06Rik / Q8VDP2 / UPF0428
  
Possible biological names infered from orthology : chromosome X open reading frame 56 / CXorf56 / Q9H5V9
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A3.3
Gene start: 36823737
Gene end: 36874111
  
Corresponding Affymetrix probe sets: 10427266 (MoGene1.0st)   10455372 (MoGene1.0st)   10604046 (MoGene1.0st)   10604072 (MoGene1.0st)   1450840_a_at (Mouse Genome 430 2.0 Array)   1451202_at (Mouse Genome 430 2.0 Array)   1454174_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000040134
Ensembl peptide - ENSMUSP00000110903
Ensembl peptide - ENSMUSP00000110904
NCBI entrez gene - 77644     See in Manteia.
MGI - MGI:1924894
RefSeq - NM_029951
RefSeq - XM_006541410
RefSeq Peptide - NP_084227
swissprot - Q8VDP2
swissprot - Z4YLD0
Ensembl - ENSMUSG00000006423
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:103697ENSDARG00000067981Danio rerio
 CXorf56ENSGALG00000008652Gallus gallus
 Q9H5V9ENSG00000018610Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029704  UPF0428 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003984 embryonic growth retardation "slow or limited development before birth" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Hsd17b7tm1Mpo/Hsd17b7tm1Mpo
Genetic Background: involves: 129S7/SvEvBrd

 MP:0012132 abnormal midbrain-hindbrain boundary morphology "any structural anomaly of the midbrain-hindbrain domain of the embryonic brain that is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages; normally, an organizing center located at the boundary patterns the midbrain and hindbrain primordia of the neural plate" [MGI:anna]
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Allelic Composition: AtrxGt(E085A04)Wrst/Y
Genetic Background: chimera involves: 129P2/OlaHsd

 MP:0012138 decreased forebrain size "size reduction or truncation of the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions)" [GO:0048853]
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Allelic Composition: AtrxGt(E085A04)Wrst/Y
Genetic Background: chimera involves: 129P2/OlaHsd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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