ENSMUSG00000015488


Mus musculus

Features
Gene ID: ENSMUSG00000015488
  
Biological name :Cacfd1
  
Synonyms : Cacfd1 / Calcium channel flower homolog / Q8BG21
  
Possible biological names infered from orthology : calcium channel flower domain containing 1 / Q9UGQ2
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: A3
Gene start: 27009926
Gene end: 27021089
  
Corresponding Affymetrix probe sets: 10470381 (MoGene1.0st)   10470388 (MoGene1.0st)   1424690_at (Mouse Genome 430 2.0 Array)   1424691_at (Mouse Genome 430 2.0 Array)   1435018_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000109637
Ensembl peptide - ENSMUSP00000109640
Ensembl peptide - ENSMUSP00000109636
Ensembl peptide - ENSMUSP00000122562
Ensembl peptide - ENSMUSP00000109638
Ensembl peptide - ENSMUSP00000109639
NCBI entrez gene - 381356     See in Manteia.
MGI - MGI:1924317
RefSeq - XM_006498159
RefSeq - XM_006498160
RefSeq - NM_001243239
RefSeq - NM_001243240
RefSeq - NM_029862
RefSeq Peptide - NP_001230168
RefSeq Peptide - NP_001230169
RefSeq Peptide - NP_084138
swissprot - Q8BG21
swissprot - F7CPS9
swissprot - A6PWX1
Ensembl - ENSMUSG00000015488
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CACFD1ENSDARG00000090818Danio rerio
 CACFD1ENSGALG00000034132Gallus gallus
 CACFD1ENSG00000160325Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019365  TVP18/Calcium channel flower


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016192 vesicle-mediated transport IBA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000352 decreased cell proliferation "less than the normal growth and reproduction of similar cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Cspg4tm1Ychan/Cspg4tm1Ychan,Olig2tm2(TVA,cre)Rth/Olig2+
Genetic Background: involves: 129 * C57BL/6N

 MP:0001489 decreased startle reflex "greater threshold or less severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, What s Wrong With My Mouse?:ISBN 0-471-31639-3]
Show

Allelic Composition: Bmpr2tm1Mmue/Bmpr2+,Smad1tm1Rjle/Smad1+
Genetic Background: involves: 129S1/SvImJ * 129S6/SvEvTac * C57BL/6

 MP:0001552 increased circulating triglyceride level "higher than normal concentration of triacylglycerols in the blood" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:65416]
Show

Allelic Composition: Bmpr2tm1Mmue/Bmpr2+,Smad1tm1Rjle/Smad1+
Genetic Background: involves: 129S1/SvImJ * 129S6/SvEvTac * C57BL/6

 MP:0004502 decreased incidence of chemically-induced tumors "lower than normal frequency of tumor incidence induced by one or more chemical carcinogens or mutagens" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cspg4tm1Ychan/Cspg4tm1Ychan,Olig2tm2(TVA,cre)Rth/Olig2+
Genetic Background: involves: 129 * C57BL/6N

 MP:0005178 increased total circulating cholesterol level "greater than the normal concentration in the blood of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Bmpr2tm1Mmue/Bmpr2+,Smad1tm1Rjle/Smad1+
Genetic Background: involves: 129S1/SvImJ * 129S6/SvEvTac * C57BL/6

 MP:0006042 increased apoptosis "greater than normal programmed cell death" [RGD:Rat Genome Database submission, smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Cspg4tm1Ychan/Cspg4tm1Ychan,Olig2tm2(TVA,cre)Rth/Olig2+
Genetic Background: involves: 129 * C57BL/6N

 MP:0009828 delayed tumor appearance "later onset of tumor occurence than expected, but with expected incidence" [MGI:mberry "Melissa Berry, Genetics Resources Curator"]
Show

Allelic Composition: Cspg4tm1Ychan/Cspg4tm1Ychan,Olig2tm2(TVA,cre)Rth/Olig2+
Genetic Background: involves: 129 * C57BL/6N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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