ENSMUSG00000016541


Mus musculus

Features
Gene ID: ENSMUSG00000016541
  
Biological name :Atxn10
  
Synonyms : Ataxin-10 / Atxn10 / P28658
  
Possible biological names infered from orthology : Q9UBB4
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: E2
Gene start: 85336245
Gene end: 85463212
  
Corresponding Affymetrix probe sets: 10425966 (MoGene1.0st)   1422576_at (Mouse Genome 430 2.0 Array)   1431377_at (Mouse Genome 430 2.0 Array)   1438653_x_at (Mouse Genome 430 2.0 Array)   1447920_at (Mouse Genome 430 2.0 Array)   1450666_s_at (Mouse Genome 430 2.0 Array)   1456466_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000132450
NCBI entrez gene - 54138     See in Manteia.
MGI - MGI:1859293
RefSeq - NM_016843
RefSeq Peptide - NP_058539
swissprot - P28658
Ensembl - ENSMUSG00000016541
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atxn10ENSDARG00000008439Danio rerio
 ATXN10ENSGALG00000014234Gallus gallus
 ATXN10ENSG00000130638Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR019156  Ataxin-10 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0070207 protein homotrimerization IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000063 reduced bone density "decreased mineral content of bone; indicator of bone strength" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:57315]
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Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

 MP:0011095 complete embryonic lethality between implantation and placentation "death of all organisms of a given genotype in a population between the point of implantation and the initiation of placentation (Mus: E4.5 to less than E9)" [MGI:csmith]
Show

Allelic Composition: Slc6a3tm1Rbl/Slc6a3+
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

Allelic Composition: Atxn10Gt(OST237477)Lex/Atxn10Gt(OST237477)Lex
Genetic Background: involves: 129S5/SvEvBrd * C57BL/6

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

 MP:0013292 embryonic lethality prior to organogenesis "death prior to the completion of embryo turning (Mus: E9-9.5)" [MGI:smb]
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Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

 MP:0013294 prenatal lethality prior to heart atrial septation "death prior to the completion of heart atrial septation (Mus: E14.5-15.5)" [MGI:smb]
Show

Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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