ENSMUSG00000018809


Mus musculus

Features
Gene ID: ENSMUSG00000018809
  
Biological name :Smyd4
  
Synonyms : Q8BTK5 / SET and MYND domain-containing protein 4 / Smyd4
  
Possible biological names infered from orthology : Q8IYR2 / SET and MYND domain containing 4
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B5
Gene start: 75348433
Gene end: 75405705
  
Corresponding Affymetrix probe sets: 10378555 (MoGene1.0st)   1442308_at (Mouse Genome 430 2.0 Array)   1460053_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000047505
NCBI entrez gene - 319822     See in Manteia.
MGI - MGI:2442796
RefSeq - XM_006533537
RefSeq - NM_001102611
RefSeq - XM_006533535
RefSeq - XM_006533536
RefSeq Peptide - NP_001096081
swissprot - Q8BTK5
Ensembl - ENSMUSG00000018809
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smyd4ENSDARG00000060983Danio rerio
 SMYD4ENSGALG00000003031Gallus gallus
 SMYD4ENSG00000186532Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR002893  Zinc finger, MYND-type
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003205 testicular atrophy "wasting of the male reproductive glands resulting in reduced size" [RGD:Rat Genome Database submission]
Show

Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

 MP:0013600 testis degeneration "a retrogressive impairment of function or destruction of either or both of the male reproductive glands" [MGI:Anna]
Show

Allelic Composition: Smstm1a(EUCOMM)Wtsi/Y
Genetic Background: B6JTyr;B6N-Smstm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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