ENSMUSG00000021098


Mus musculus

Features
Gene ID: ENSMUSG00000021098
  
Biological name :4930447C04Rik
  
Synonyms : 4930447C04Rik / Q9CTN5 / RIKEN cDNA 4930447C04 gene
  
Possible biological names infered from orthology : C14orf39 / chromosome 14 open reading frame 39 / Q8N1H7
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: C3
Gene start: 72881109
Gene end: 72940774
  
Corresponding Affymetrix probe sets: 10400948 (MoGene1.0st)   1431393_at (Mouse Genome 430 2.0 Array)   1431896_at (Mouse Genome 430 2.0 Array)   1446260_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118104
Ensembl peptide - ENSMUSP00000119777
Ensembl peptide - ENSMUSP00000121857
Ensembl peptide - ENSMUSP00000120109
Ensembl peptide - ENSMUSP00000035376
Ensembl peptide - ENSMUSP00000106115
Ensembl peptide - ENSMUSP00000116391
NCBI entrez gene - 75801     See in Manteia.
MGI - MGI:1923051
RefSeq - XM_017315240
RefSeq - XM_011244202
RefSeq - XM_011244203
RefSeq - XM_011244205
RefSeq - XM_011244206
RefSeq - XM_017315237
RefSeq - XM_017315238
RefSeq - XM_017315239
RefSeq - NM_029444
RefSeq - XM_011244200
RefSeq - XM_011244201
RefSeq Peptide - NP_083720
swissprot - F7BAS9
swissprot - F8WHJ9
swissprot - D3YZ78
swissprot - D3Z202
swissprot - Q9CTN5
swissprot - D3YUI5
Ensembl - ENSMUSG00000021098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 C14orf39ENSGALG00000036504Gallus gallus
 Q8N1H7ENSG00000179008Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR031380  Six6 opposite strand transcript 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0007129 synapsis IMP
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IMP
 biological_processGO:0010705 meiotic DNA double-strand break processing involved in reciprocal meiotic recombination IMP
 biological_processGO:0048477 oogenesis IMP
 biological_processGO:0051090 regulation of DNA-binding transcription factor activity NAS
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000801 central element IDA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001126 abnormal ovary morphology "malformed female reproductive gland containing the germ cells" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:35782]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0001926 female infertility "inability of female to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34193]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0001930 abnormal meiosis "malfunction in the process of nuclear division that results in gametes with one half the normal number of the original cell" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0001931 abnormal oogenesis "atypical formation or failure to form the female germ cells" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:35782]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0002216 abnormal seminiferous tubule morphology "malformation of the tubules in the testes where spermatogenesis occurs" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0004805 absent oocytes "absence of mature germ cells in the female" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0005159 azoospermia "absence of living spermatozoa " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0005169 abnormal male meiosis "malfunction in the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0008261 arrest of male meiosis "cessation of the progression of the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0008871 abnormal ovarian follicle number "abnormal numbers of spheroid cell aggregations in the ovary" [MGI:mnk "Michelle Knowlton, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0008966 abnormal chiasmata formation "atypical contact between nonsister chromatids of homologous chromosomes during meiosis I, precluding formation of the expected number of cross-shaped configurations representing recombination events" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0009451 abnormal chromosome pairing during meiosis "an anomaly in the highly specific side-by-side association of homologous chromosomes during first prophase of meiosis" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0011751 abnormal X-Y chromosome synapsis during male meiosis "an anomaly in the process in which the side by side pairing and physical juxtaposition of X and Y chromosomes is created at the metaphase plate, usually resulting in incorrect sex chromosome disjunction" [MGI:llw2]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

 MP:0014052 increased male germ cell apoptosis "greater number of male germs cells that undergo programmed cell death" [MGI:csmith]
Show

Allelic Composition: Il6sttm1Ern/Il6sttm1Ern,Tg(RP11-H2112)9Trme/0
Genetic Background: involves: 129S1/Sv * C57BL/6J * DBA/2J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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