ENSMUSG00000021179


Mus musculus

Features
Gene ID: ENSMUSG00000021179
  
Biological name :Nrde2
  
Synonyms : isoform b / Nrde2 / Q80XC6
  
Possible biological names infered from orthology : NRDE-2, necessary for RNA interference, domain containing / Q9H7Z3
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: E
Gene start: 100125452
Gene end: 100159653
  
Corresponding Affymetrix probe sets: 10402080 (MoGene1.0st)   1441426_at (Mouse Genome 430 2.0 Array)   1451303_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000021596
Ensembl peptide - ENSMUSP00000152698
NCBI entrez gene - 217827     See in Manteia.
MGI - MGI:2670969
RefSeq - XM_011244093
RefSeq - NM_001290303
RefSeq - NM_183155
RefSeq Peptide - NP_001277232
RefSeq Peptide - NP_898978
swissprot - Q80XC6
swissprot - A0A1Y7VLX9
Ensembl - ENSMUSG00000021179
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nrde2ENSDARG00000074726Danio rerio
 NRDE2ENSGALG00000010677Gallus gallus
 NRDE2ENSG00000119720Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013633  siRNA-mediated silencing protein NRDE-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0016246 RNA interference IBA
 biological_processGO:0031048 chromatin silencing by small RNA IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000480 increased number of ribs "greater than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings, 2003]
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Allelic Composition: Ltatm1.1(KOMP)Vlcg/Ltatm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Ltatm1.1(KOMP)Vlcg/Ucd

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Izumo1rtm2a(KOMP)Wtsi/Izumo1rtm2a(KOMP)Wtsi
Genetic Background: C57BL/6N-Izumo1rtm2a(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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