ENSMUSG00000021660


Mus musculus

Features
Gene ID: ENSMUSG00000021660
  
Biological name :Btf3
  
Synonyms : Btf3 / Q64152 / Transcription factor BTF3
  
Possible biological names infered from orthology : basic transcription factor 3 / P20290
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: D1
Gene start: 98309896
Gene end: 98317006
  
Corresponding Affymetrix probe sets: 10411448 (MoGene1.0st)   1423839_a_at (Mouse Genome 430 2.0 Array)   1433863_at (Mouse Genome 430 2.0 Array)   1449643_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022163
Ensembl peptide - ENSMUSP00000115500
Ensembl peptide - ENSMUSP00000118093
NCBI entrez gene - 218490     See in Manteia.
MGI - MGI:1202875
RefSeq - NM_001170540
RefSeq - NM_145455
RefSeq Peptide - NP_001164011
RefSeq Peptide - NP_663430
swissprot - Q3UJR8
swissprot - Q64152
Ensembl - ENSMUSG00000021660
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 btf3ENSDARG00000035400Danio rerio
 ENSGALG00000013512Gallus gallus
 BTF3ENSG00000145741Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Btf3l4 / Q9CQH7 / Mus musculus basic transcription factor 3-like 4 (Btf3l4), transcript variant 2, mRNA.ENSMUSG0000002856861
Q9CQH7 / Gm20075 / predicted gene, 20075 / Q96K17* / BTF3L4* / basic transcription factor 3 like 4*ENSMUSG0000011413361


Protein motifs (from Interpro)
Interpro ID Name
 IPR002715  Nascent polypeptide-associated complex NAC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0009687 empty decidua capsularis "the implanted embryo normally covered opposite the placenta by uterine mucosa and epithelium following implantation is missing, suggesting the embryo died early during implantation but after the decidual response and modification of uterine stromal cells" [ISBN:0198542771 "Rugh, Roberts, The Mouse: Its Reproduction and Development", MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
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Allelic Composition: Psip1Gt(betageo)1Hgs/Psip1Gt(betageo)1Hgs
Genetic Background: either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * MF1)

 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
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Allelic Composition: Psip1Gt(betageo)1Hgs/Psip1Gt(betageo)1Hgs
Genetic Background: either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * MF1)

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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