ENSMUSG00000022594


Mus musculus

Features
Gene ID: ENSMUSG00000022594
  
Biological name :Lynx1
  
Synonyms : Ly-6/neurotoxin-like protein 1 / Lynx1 / P0DP60
  
Possible biological names infered from orthology : Ly6/neurotoxin 1 / P0DP58
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: D3
Gene start: 74747852
Gene end: 74753046
  
Corresponding Affymetrix probe sets: 10429515 (MoGene1.0st)   1417283_at (Mouse Genome 430 2.0 Array)   1441952_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000139494
Ensembl peptide - ENSMUSP00000023259
NCBI entrez gene - 23936     See in Manteia.
MGI - MGI:1345180
RefSeq - NM_011838
RefSeq Peptide - NP_035968
swissprot - A0A087WNU3
swissprot - P0DP60
Ensembl - ENSMUSG00000022594
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYNX1ENSG00000180155Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR016054  Ly-6 antigen/uPA receptor-like
 IPR035076  Snake toxin/toxin-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007271 synaptic transmission, cholinergic IDA
 biological_processGO:0099601 regulation of neurotransmitter receptor activity IEA
 biological_processGO:2000272 negative regulation of signaling receptor activity IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008200 ion channel inhibitor activity IDA
 molecular_functionGO:0030548 acetylcholine receptor regulator activity IEA
 molecular_functionGO:0030550 acetylcholine receptor inhibitor activity IDA
 molecular_functionGO:0033130 acetylcholine receptor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000780 abnormal corpus callosum morphology "malformation or absence of a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres; it consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0000783 abnormal forebrain morphology "malformed or absent anterior primitive cerebral vesicle; most rostral of three primary vesicles of the embryonic neural tube" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:38857]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0000841 abnormal hindbrain morphology "malformed caudal region of the brain; includes cerebellum, pons and medulla oblongata" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:45302]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0000849 abnormal cerebellum morphology "any malformation or absence of the part of the metencephalon that lies in the posterior cranial fossa dorsal to the pons and medulla that is concerned with the coordination of movement and learning of motor skills" [J:50311, Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0001454 abnormal cued conditioning behavior "defect in the ability of an animal to learn and remember an association between an an aversive experience (the unconditioned stimulus (US), ususally a shock) and a neutral stimulus (the conditioned stimulus (CS), usually an auditory cue or light)" [CFG:Center for Functional Genomics , Northwestern University]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0001516 abnormal motor coordination/ balance "altered ability of an animal to maintain skillful and effective interaction of movements or maintenance of equilibrium" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0002920 reduced paired-pulse facilitation "decrease in the response of central synapses when activated twice in rapid succession; indicative of defects in short-term plasticity due to lack of increase of neurotransmitter release at the second stimulus" [Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0003224 neuron degeneration "a retrogressive impairment of function or destruction of the functional cells of the nervous system that receive, conduct, and transmit impulses " [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0003633 abnormal nervous system physiology 
Show

Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0004077 abnormal striatum morphology "malformation of a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking" [Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
Show

Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0004102 abnormal dorsal striatum morphology "any structural abnormality of the regions of the caudate nucleus and the putamen that lie dorsal to the anterior commissure" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0005405 axon degeneration "retrogressive pathologic change in the single process of a nerve cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0008025 brain vacuoles "the abnormal presence of cavities or fluid-filled vesicles in the soma of brain cells, often indicative of spongiosis or other pathological states" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0008235 increased susceptibility to neuronal excitotoxicity "greater than normal amount of neuronal cell death following exposure to a neurotoxic compound, such as kaniate-induced neuronal cell death mediated via a glutamate excitotoxic process" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

 MP:0008873 increased sensitivity to xenobiotics "decrease in the dose or concentration of a foreign compound required to induce a specific level of response" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ntrk2tm2Lfr/Ntrk2tm2Lfr,Tg(Six3-cre)69Frty/?,Tg(Thy1-YFP)HJrs/?
Genetic Background: involves: C57BL/6 * CBA * DBA/2

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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