ENSMUSG00000022941


Mus musculus

Features
Gene ID: ENSMUSG00000022941
  
Biological name :Ripply3
  
Synonyms : Q924S9 / Ripply3 / ripply transcriptional repressor 3
  
Possible biological names infered from orthology : P57055
  
Species: Mus musculus
  
Chr. number: 16
Strand: 1
Band: C4
Gene start: 94328420
Gene end: 94336935
  
Corresponding Affymetrix probe sets: 10437073 (MoGene1.0st)   1420459_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023660
NCBI entrez gene - 170765     See in Manteia.
MGI - MGI:2181192
RefSeq - NM_133229
RefSeq Peptide - NP_573492
swissprot - Q924S9
Ensembl - ENSMUSG00000022941
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q2WG78ENSDARG00000036974Danio rerio
 ENSGALG00000029218Gallus gallus
 P57055ENSG00000183145Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR028127  Ripply family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0009880 embryonic pattern specification IBA
 biological_processGO:0060037 pharyngeal system development IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000272 abnormal aorta morphology "structural anomaly of the main trunk of the systemic arteries" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0000364 abnormal vascular regression "premature regression or persistence of vessels programmed to regress and/or loss of vessels not programmed to regress" [smb:Susan M. Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0000678 abnormal parathyroid gland morphology "anomalous structure of one of the two small, paired endocrine glands, usually found embedded in the connective tissue capsule on the posterior surface of the thyroid gland; they secrete parathyroid hormone (PTH) that regulates calcium and phosphorous metabolism" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0000704 abnormal thymus development "anomaly in the formation and/or differentiation of the thymus" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0000706 small thymus "reduced size of the thymus" [J:36561, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:31167]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0001575 cyanosis "a dark bluish or purple skin discoloration resulting from deficient oxygenation of the blood" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60159]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0002127 abnormal cardiovascular system morphology "abnormal development of the heart or vascular tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ripply3tm1Sjt/Ripply3tm1Sjt,Tbx1tm1Bem/Tbx1tm1Bem
Genetic Background: involves: 129/Sv * 129S1/Sv * C57BL/6J * SJL

 MP:0002191 abnormal artery morphology "malformation of the blood vessels that carry blood away from the heart" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0002950 abnormal neural crest cell migration "defect in the dispersion of the transient and migratory group of cells that emerge from the dorsal region of the neural tube and migrate to many peripheral locations to form various tissues of the adult" [Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0003007 ectopic thymus "ectopic location of the thymus primordium, which normally resides in the superior mediastinum and lower part of the neck" [ava:Anna V. Anagnostopoulos , Mouse Genome Informatics Curator, J:76015]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0003395 abnormal subclavian artery morphology "malformation of the right or left subclavian arteries, The right subclavian artery extends from the brachiocephalic artery to the right side of the body. The left subclavian artery extends from the aortic arch to the left side of the body." [ncbi:Matthew Mailman, NCBI request, smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0003955 abnormal ultimobranchial body "a sac-like structure emanating from the caudal-most branchial pouch of the embryo; develops into the lateral portion of the thyroid that produced calcitonin in higher vertebrates" [hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0004157 interrupted aortic arch "complete discontinuation/blockage between the ascending and descending aorta; includes Type A, interruption distal to the subclavian artery that is ipsilateral to the second carotid artery, and Type B, interruption between second carotid artery and ipsilateral subclavian artery" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0005561 increased mean corpuscular hemoglobin "greater than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Otud7btm1(NCOM)Cmhd/Otud7btm1(NCOM)Cmhd
Genetic Background: C57BL/6N-Otud7btm1(NCOM)Cmhd/Tcp

 MP:0006031 abnormal branchial pouch morphology "malfomation or anomaly in the series of grooves that form between the branchial arches; these endodermal evaginations develop into epithelial tissues and organs" [smb:Susan M Bello, Mouse Genome Informatics Curator, Gray s Anatomy:ISBN 0-914294-08-3]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

Allelic Composition: Ripply3tm1Sjt/Ripply3tm1Sjt,Tbx1tm1Bem/Tbx1tm1Bem
Genetic Background: involves: 129/Sv * 129S1/Sv * C57BL/6J * SJL

 MP:0006339 abnormal third branchial arch morphology "anomaly in the structure of the third are which contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0006340 abnormal fourth branchial arch morphology "anomaly in the structure of the fourth arch which contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", zillmusom:http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

Allelic Composition: Ripply3tm1Sjt/Ripply3+,Tbx1tm1Bem/Tbx1+
Genetic Background: involves: 129/Sv * 129S1/Sv * C57BL/6J * SJL

 MP:0006346 small branchial arch "reduced size of one or more of the branchial arches" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

Allelic Composition: Ripply3tm1Sjt/Ripply3+,Tbx1tm1Bem/Tbx1+
Genetic Background: involves: 129/Sv * 129S1/Sv * C57BL/6J * SJL

 MP:0009113 increased pancreatic beta cell mass "greater total physical bulk or volume of a pancreatic beta cell compared to the normal state" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0010356 abnormal second branchial arch artery morphology "any structural anomaly of the vessels formed within the second pair of branchial arches in embryogenesis" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0010395 abnormal branchial arch development "abnormal formation of the of the transient structures of the embryo that develop into regions of the head, neck and ears" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0010402 ventricular septal defect "abnormal communications between the two lower chambers of the heart, including such defects in the perimembranous, inlet, outlet (infundibular), central muscular, marginal muscular, or apical muscular regions" [MESH:C14.240.400.560.540]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0010564 abnormal fetal ductus arteriosus morphology "any structural anomaly of the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0011087 complete neonatal lethality "death of all organisms of a given genotype in a population within the neonatal period after birth (Mus: P0)" [MGI:csmith]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0011819 increased pancreatic beta cell proliferation "increase in the ability of the cells that secrete insulin and are located towards the center of the islets of Langerhans in the pancreas to undergo expansion by cell division" [CL:0000169]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0030335 absent third pharyngeal arch artery "failure to develop or absence of the third pharyngeal arch artery" [MGI:anna]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0030340 absent fourth pharyngeal arch artery "failure to develop or absence of the fourth pharyngeal arch artery" [MGI:anna]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

 MP:0030589 increased pancreatic alpha cell mass "greater total physical bulk or volume of a pancreatic alpha cell compared to the normal state" [MGI:anna]
Show

Allelic Composition: Cochtm1.1Stw/Coch+
Genetic Background: CBA/Ca.129S1-Cochtm1.1Stw

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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