ENSMUSG00000025184


Mus musculus

Features
Gene ID: ENSMUSG00000025184
  
Biological name :R3hcc1l
  
Synonyms : Coiled-coil domain-containing protein R3HCC1L / Q8BJM3 / R3hcc1l
  
Possible biological names infered from orthology : Q7Z5L2 / R3H domain and coiled-coil containing 1 like
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C3
Gene start: 42518759
Gene end: 42592343
  
Corresponding Affymetrix probe sets: 10463254 (MoGene1.0st)   1434965_at (Mouse Genome 430 2.0 Array)   1444200_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026188
Ensembl peptide - ENSMUSP00000125554
Ensembl peptide - ENSMUSP00000124036
NCBI entrez gene - 52013     See in Manteia.
MGI - MGI:1196316
RefSeq - NM_177464
RefSeq - XM_006527182
RefSeq Peptide - NP_803415
swissprot - E0CZA8
swissprot - Q8BJM3
swissprot - E0CYN2
Ensembl - ENSMUSG00000025184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 r3hcc1lENSDARG00000089243Danio rerio
 ENSGALG00000045403Gallus gallus
 Q7Z5L2ENSG00000166024Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BSI6 / R3hcc1 / R3H domain and coiled-coil containing 1 / Q9Y3T6*ENSMUSG0000003419414


Protein motifs (from Interpro)
Interpro ID Name
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0035145 exon-exon junction complex ISS
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011275 abnormal behavioral response to light "unexpected change in the activity of an organism (in terms of movement, outward responses) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light" [GO:0009416, MGI:llw2]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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