ENSMUSG00000025188


Mus musculus

Features
Gene ID: ENSMUSG00000025188
  
Biological name :Hps1
  
Synonyms : Hps1 / Mus musculus HPS1, biosis of lysosomal organelles complex 3 subunit 1 (Hps1), transcript variant 2, mRNA.
  
Possible biological names infered from orthology : HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 / Q92902
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: C3
Gene start: 42755105
Gene end: 42779978
  
Corresponding Affymetrix probe sets: 10467802 (MoGene1.0st)   1443034_at (Mouse Genome 430 2.0 Array)   1448408_at (Mouse Genome 430 2.0 Array)   1459598_at (Mouse Genome 430 2.0 Array)   1459827_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125483
Ensembl peptide - ENSMUSP00000124209
Ensembl peptide - ENSMUSP00000125662
Ensembl peptide - ENSMUSP00000125226
Ensembl peptide - ENSMUSP00000026194
Ensembl peptide - ENSMUSP00000071069
NCBI entrez gene - 192236     See in Manteia.
MGI - MGI:2177763
RefSeq - XM_006526771
RefSeq - XM_006526770
RefSeq - XM_006526775
RefSeq - XM_006526774
RefSeq - NM_001346703
RefSeq - NM_019424
RefSeq - XM_006526776
RefSeq - XM_006526773
RefSeq Peptide - NP_062297
RefSeq Peptide - NP_001333632
swissprot - Q3U309
swissprot - E9Q045
swissprot - A0A0R4J062
swissprot - F7BWJ7
swissprot - E9PYL0
Ensembl - ENSMUSG00000025188
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hps1ENSDARG00000026170Danio rerio
 HPS1ENSGALG00000017419Gallus gallus
 HPS1ENSG00000107521Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026053  Hermansky-Pudlak syndrome 1 protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:1903232 melanosome assembly IEA
 cellular_componentGO:0031085 BLOC-3 complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000015 abnormal ear pigmentation "anomaly in the coloration of the ear" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Ap3b1pe/Ap3b1pe,Hps1ep/Hps1ep
Genetic Background: involves: C3H/He * C3HeB/FeJ * C57BL/6J

 MP:0000371 diluted coat color "a coat color that appears lighter in intensity or paler than normal" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

Allelic Composition: Hps1ep/Hps1ep,Bloc1s6pa/Bloc1s6pa
Genetic Background: B6.Cg-Bloc1s6 Hps1ep

Allelic Composition: Hps1ep-7J/Hps1ep-7J
Genetic Background: CAST/EiJ-Hps1ep-7J/GrsrJ

 MP:0001183 overexpanded alveoli "expanded volume of the saclike terminal dilation of the respiratory bronchioles" [J:66345]
Show

Allelic Composition: Trp63tm1Brd/Trp63tm1Brd
Genetic Background: involves: 129S7/SvEvBrd * C57BL/6J

 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

 MP:0001570 abnormal circulating enzyme level "aberrent concentration in the blood of any of the proteins that act as catalysts for biological reactions" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

 MP:0001861 lung inflammation "local accumulation of fluid, plasma proteins, and leukocytes in the lung" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0001958 emphysema "lung disease characterized by increased size of terminal bronchioles with destructive changes in their walls and reduction in number" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:33629]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0002136 abnormal kidney physiology "altered ability or inability to excrete urine, not due to anatomical defect" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

 MP:0002275 abnormal type II pneumocyte morphology "any structural anomaly of the epithelial cells lining the alveoli that produce surfactant " [Pathology , 2nd edition:ISBN 0-397-51047-0, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0002276 abnormal lung interstitium morphology "any structural anomaly of the lung tissue, but not including the conducting airways (bronchi, bronchioles, alveoli) " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Pathology , 2nd edition:ISBN 0-397-51047-0]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0002451 abnormal macrophage physiology "abnormal function or response of the phagocytic leukocytes involved in innate immunity, early non-adaptive phases of host-defense, antigen presentation, and which act as effector cells in humoral and cell-mediated immunity" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

 MP:0002620 abnormal monocyte morphology "anomalous structure, number, or development of the white blood cells that are precursors to macrophages" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0003068 enlarged kidney "larger than average size of the kidney" [J:86005, pvb:Pierre Vanden Borre, Mouse Genome Informatics Curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0003172 abnormal lysosome physiology "ability of lysosomes to produce enzymes necessary for digestion of exogenous material is impaired" [llw2:Linda Washburn , Mouse Genome Informatics Curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0003174 increased lysosomal enzyme secretion "production of glycoprotein hydrolytic enzymes is increased compared to normal" [llw2:Linda Washburn , Mouse Genome Informatics Curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0004725 decreased platelet serotonin level "reduced concentration of serotonin in the platelets; this biochemical messenger and regulator, found in the CNS, gastrointestinal tract, and produced by platelets mediates neurotransmission, gastrointestinal motility, hemostasis, and cardiovascular integrity" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0005075 abnormal melanosome morphology "anomalous structure of these tissue-specific cytoplasmic organelles within which melanin pigments are synthesized and stored" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:5346]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0005100 abnormal choroid pigmentation "anomalous coloring of the thin, highly vascularized membrane covering most of the posterior of the eye between the retina and the sclera" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0005101 abnormal ciliary body pigmentation "anomalous coloring of the thickened portion of the vascular tunic, which lies between the choroid and the iris" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0005102 abnormal iris pigmentation "anomalous coloring of the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0005172 lack of eye pigmentation "visual organs are devoid of coloring pigment in relation to control animals, usually resulting in a red or pink color" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:83500]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

 MP:0005339 increased susceptibility to atherosclerosis "more likely than the norm to develop thickening and loss of elasticity of arterial walls, involving lipid deposition and thickening of intimal layers within arteries" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0005464 abnormal platelet physiology "atypical response of the non-nucleated cells found in the blood and involved in blood coagulation" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0005606 increased bleeding time "greater than the normal duration of blood flow after skin puncture; indicative of platelet and capillary function" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, RGD:Rat Genome Database submission]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0005630 increased lung weight "greater than the normal state of the physical heaviness of the lung" [RGD:Rat Genome Database submission]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0006382 abnormal lung epithelium morphology "any structural anomaly of the epithelial layer of the lung" [MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0009448 decreased platelet ATP level "reduced concentration of the major energy source adenosine triphosphate produced by dense bodies located in platelets" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0009557 decreased platelet ADP level "reduced concentration of the major energy source adenosine diphosphate produced by dense bodies located in platelets" [MGI:mberry "Melissa Berry, Genetics Resources Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0009643 abnormal urine homeostasis "anomaly in the processes involved in the maintenance of an internal equilibrium of various functions and chemical or protein composition of the urine" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

 MP:0010766 abnormal NK cell physiology "any functional anomaly of a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors, and also regulate immune responses via cytokine release and direct contact with other cells" [GOC:add, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:15771571]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0010815 enlarged alveolar lamellar bodies "increased size of the specialized secretory organelles found in the cytoplasm of type II pneumocytes and involved in the synthesis, secretion, and reutilization of pulmonary surfactant" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

Allelic Composition: Ap3b1pe/Ap3b1pe,Hps1ep/Hps1ep
Genetic Background: involves: C3H/He * C3HeB/FeJ * C57BL/6J

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0010922 alveolitis "inflammation of the small sac-like dilations of the distal airspace of the lung; acute pulmonary alveolitis involves exudate into the pulmonary alveoli and impaired gas exchange" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

 MP:0010950 abnormal lung hysteresivity "anomaly in the lung tissue property defined as the ratio of dissipated energy to stored energy over a respiratory cycle; it can be measured as the area enclosed by a pressure-volume loop of the lung, and is dependent on composition and microstructure of the tissue components such as the elastic connective tissue" [PMID:2606848]
Show

Allelic Composition: Ap3b1pe/Ap3b1pe,Hps1ep/Hps1ep
Genetic Background: involves: C3H/He * C3HeB/FeJ * C57BL/6J

 MP:0011086 partial postnatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms anytime between the neonatal period and weaning age (Mus: P1 to approximately 3 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Hps1ep-7J/Hps1ep-7J
Genetic Background: CAST/EiJ-Hps1ep-7J/GrsrJ

 MP:0011090 partial perinatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the perinatal period (Mus: E18.5 through postnatal day 1)" [MGI:csmith]
Show

Allelic Composition: Hps1ep-7J/Hps1ep-7J
Genetic Background: CAST/EiJ-Hps1ep-7J/GrsrJ

 MP:0011277 decreased tail pigmentation "visually detectable dilution of pigment present on the tail surface" [MGI:csmith]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

Allelic Composition: Hps1ep-7J/Hps1ep-7J
Genetic Background: CAST/EiJ-Hps1ep-7J/GrsrJ

 MP:0011279 decreased ear pigmentation "visually detectable dilution of pigment present in the outer ear" [MGI:csmith]
Show

Allelic Composition: Tbx1tm1Pa/Tbx1tm1Pa
Genetic Background: involves: 129 * C57BL/6

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: B6.C3Fe-Hps1ep/J

Allelic Composition: Hps1ep-7J/Hps1ep-7J
Genetic Background: CAST/EiJ-Hps1ep-7J/GrsrJ

 MP:0020432 decreased platelet dense granule number "decreased number of the electron-dense bodies occurring in blood platelets that store and secrete adenosine nucleotides and serotonin" [orcid.org/0000-0003-4606-0597]
Show

Allelic Composition: Hps1ep/Hps1ep
Genetic Background: involves: C3HeB/FeJ * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr