ENSMUSG00000027800


Mus musculus

Features
Gene ID: ENSMUSG00000027800
  
Biological name :Tm4sf1
  
Synonyms : Mus musculus transmembrane 4 superfamily member 1 (Tm4sf1), transcript variant 2, mRNA. / Q64302 / Tm4sf1
  
Possible biological names infered from orthology : P30408 / transmembrane 4 L six family member 1
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: D
Gene start: 57285611
Gene end: 57301988
  
Corresponding Affymetrix probe sets: 10498273 (MoGene1.0st)   1439925_at (Mouse Genome 430 2.0 Array)   1448069_at (Mouse Genome 430 2.0 Array)   1450958_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143697
Ensembl peptide - ENSMUSP00000029376
Ensembl peptide - ENSMUSP00000130999
Ensembl peptide - ENSMUSP00000143652
NCBI entrez gene - 17112     See in Manteia.
MGI - MGI:104678
RefSeq - XM_006501080
RefSeq - NM_001355130
RefSeq - NM_008536
RefSeq Peptide - NP_001342059
RefSeq Peptide - NP_032562
swissprot - Q64302
swissprot - A0A0G2JGU1
Ensembl - ENSMUSG00000027800
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tm4sf18ENSDARG00000060668Danio rerio
 P30408ENSG00000169908Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tm4sf4 / transmembrane 4 superfamily member 4 / P48230* / transmembrane 4 L six family member 4*ENSMUSG0000002780148
Tm4sf5 / transmembrane 4 superfamily member 5 / O14894* / transmembrane 4 L six family member 5*ENSMUSG0000001891944
Tm4sf19 / transmembrane 4 L six family member 19 / Q96DZ7* / TM4SF19-TCTEX1D2* / TM4SF19-TCTEX1D2 readthrough (NMD candidate)*ENSMUSG0000007962528


Protein motifs (from Interpro)
Interpro ID Name
 IPR008661  L6 membrane


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005887 integral component of plasma membrane ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr