ENSMUSG00000029594


Mus musculus

Features
Gene ID: ENSMUSG00000029594
  
Biological name :Rbm19
  
Synonyms : Probable RNA-binding protein 19 / Q8R3C6 / Rbm19
  
Possible biological names infered from orthology : Q9Y4C8 / RNA binding motif protein 19
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 120116465
Gene end: 120198981
  
Corresponding Affymetrix probe sets: 10525043 (MoGene1.0st)   1451365_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144339
Ensembl peptide - ENSMUSP00000031590
NCBI entrez gene - 74111     See in Manteia.
MGI - MGI:1921361
RefSeq - NM_028762
RefSeq Peptide - NP_083038
swissprot - A0A0J9YUT8
swissprot - Q8R3C6
Ensembl - ENSMUSG00000029594
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm19ENSDARG00000042590Danio rerio
 RBM19ENSGALG00000008289Gallus gallus
 RBM19ENSG00000122965Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034417  Probable RNA-binding protein 19, RNA recognition motif 2
 IPR034418  Probable RNA-binding protein 19, RNA recognition motif 1
 IPR034419  Probable RNA-binding protein 19, RNA recognition motif 3
 IPR034420  Probable RNA-binding protein 19, RNA recognition motif 4
 IPR034421  Probable RNA-binding protein 19, RNA recognition motif 6
 IPR034423  Probable RNA-binding protein 19, RNA recognition motif 5
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0040019 positive regulation of embryonic development IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001730 embryonic growth arrest "the cessation of development beyond a particular stage" [J:17509]
Show

Allelic Composition: Il6sttm3Thir/Il6sttm3Thir
Genetic Background: Not Specified

 MP:0003111 abnormal nucleus morphology "abnormalities in the nucleus and/or its surrounding membrane" [J:91473, smb:Susan M. Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Il6sttm3Thir/Il6sttm3Thir
Genetic Background: Not Specified

 MP:0009781 abnormal preimplantation embryo development "an anomaly in the developmental progress of an embryo from 2 cell to blastocyst affecting the viability or number of embryos" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il6sttm3Thir/Il6sttm3Thir
Genetic Background: Not Specified

 MP:0011094 complete embryonic lethality before implantation "death of all organisms of a given genotype in a population between fertilization and implantation (Mus: E0 to less than E4.5)" [MGI:csmith]
Show

Allelic Composition: Il6sttm3Thir/Il6sttm3Thir
Genetic Background: Not Specified

 MP:0012111 failure of morula compaction "inability to initiate or maintain the first cell differentiation event in mammalian development, occurring at the late eight-cell stage in the mouse, whereby cells on the outer part of the morula become flattened and bound tightly together with the formation of desmosomes and gap junctions, becoming nearly indistinguishable" [MGI:anna]
Show

Allelic Composition: Il6sttm3Thir/Il6sttm3Thir
Genetic Background: Not Specified

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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