ENSMUSG00000031480


Mus musculus

Features
Gene ID: ENSMUSG00000031480
  
Biological name :Thsd1
  
Synonyms : thrombospondin, type I, domain 1 / Thsd1
  
Possible biological names infered from orthology : Q9NS62 / thrombospondin type 1 domain containing 1
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: A2
Gene start: 22227313
Gene end: 22261334
  
Corresponding Affymetrix probe sets: 10570786 (MoGene1.0st)   1418205_at (Mouse Genome 430 2.0 Array)   1449621_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148214
Ensembl peptide - ENSMUSP00000067701
Ensembl peptide - ENSMUSP00000125118
NCBI entrez gene - 56229     See in Manteia.
MGI - MGI:1929096
RefSeq - XM_006509177
RefSeq - NM_001205253
RefSeq - NM_001293688
RefSeq - NM_019576
RefSeq - XM_006509173
RefSeq - XM_006509174
RefSeq - XM_006509175
RefSeq Peptide - NP_001280617
RefSeq Peptide - NP_062522
RefSeq Peptide - NP_001192182
swissprot - G3XA27
swissprot - A0A1B0GT60
swissprot - A0A0R4J0U4
Ensembl - ENSMUSG00000031480
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thsd1ENSDARG00000112294Danio rerio
 thsd1ENSDARG00000075273Danio rerio
 THSD1ENSGALG00000028083Gallus gallus
 THSD1ENSG00000136114Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR036383  Thrombospondin type-1 (TSP1) repeat superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
O-glycosylation of TSR domain-containing proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002590 increased mean corpuscular volume "greater than the average amount of space occupied by each red blood cell, calculated from the hematocrit and red cell count, in erythrocyte indices" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Syt1tm1a(EUCOMM)Wtsi/Syt1tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Syt1tm1a(EUCOMM)Wtsi/Wtsi

 MP:0002702 decreased circulating free fatty acid level "lower than normal levels of unesterified fatty acids in the blood" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Syt1tm1a(EUCOMM)Wtsi/Syt1tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Syt1tm1a(EUCOMM)Wtsi/Wtsi

 MP:0005561 increased mean corpuscular hemoglobin "greater than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Syt1tm1a(EUCOMM)Wtsi/Syt1tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Syt1tm1a(EUCOMM)Wtsi/Wtsi

 MP:0010025 decreased total body fat amount "less than the normal total amount of connective tissue composed of fat cells within the entire body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Syt1tm1a(EUCOMM)Wtsi/Syt1tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Syt1tm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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