ENSMUSG00000035456


Mus musculus

Features
Gene ID: ENSMUSG00000035456
  
Biological name :Prdm8
  
Synonyms : Prdm8 / PR domain containing 8
  
Possible biological names infered from orthology : PR/SET domain 8 / Q9NQV8
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: E3
Gene start: 98167198
Gene end: 98188991
  
Corresponding Affymetrix probe sets: 10523483 (MoGene1.0st)   1455925_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000147333
Ensembl peptide - ENSMUSP00000108583
NCBI entrez gene - 77630     See in Manteia.
MGI - MGI:1924880
RefSeq - NM_029947
RefSeq - XM_006535284
RefSeq - XM_011249594
RefSeq Peptide - NP_084223
swissprot - B2RU90
Ensembl - ENSMUSG00000035456
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM8ENSG00000152784Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5HZG9 / Zfp488 / zinc finger protein 488 / Q96MN9* / ZNF488*ENSMUSG0000004451913


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001212 skin lesions "focal patches of inflammation on the skin" [J:30162]
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Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

 MP:0001412 excessive scratching "compulsive scraping of the skin, usually with the nails" [J:61340]
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Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

 MP:0001516 abnormal motor coordination/ balance "altered ability of an animal to maintain skillful and effective interaction of movements or maintenance of equilibrium" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

 MP:0002196 acallosal "absence of the commissural plate interconnecting the cortical hemispheres of the brain" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

 MP:0002961 abnormal axon guidance "defect in the signaling mechanisms that allow precise navigation and connections of axonal growth cones to effector tissues " [Principles of Neural Science , 3rd edition:ISBN 0-8385-8034-3]
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Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

 MP:0008223 absent hippocampal commissure "absence of the triangular subcallosal plate of commissural fibers resulting from the converging of the right and left fornix bundles which exchange numerous fibers and which curve back in the contralateral fornix to end in the hippocampus of the opposite side" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Casp6tm1.2Xen/Casp6+
Genetic Background: FVB.B6NTac-Casp6tm1.2Xen

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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