ENSMUSG00000036853


Mus musculus

Features
Gene ID: ENSMUSG00000036853
  
Biological name :Mcoln3
  
Synonyms : Mcoln3 / mucolipin 3 / Q8R4F0
  
Possible biological names infered from orthology : Q8TDD5
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: H2
Gene start: 146117450
Gene end: 146141806
  
Corresponding Affymetrix probe sets: 10496756 (MoGene1.0st)   1437540_at (Mouse Genome 430 2.0 Array)   1450148_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000038801
Ensembl peptide - ENSMUSP00000115655
NCBI entrez gene - 171166     See in Manteia.
MGI - MGI:1890500
RefSeq - XM_006501087
RefSeq - NM_134160
RefSeq - XM_006501083
RefSeq - XM_006501084
RefSeq - XM_006501085
RefSeq - XM_006501086
RefSeq - XM_006501081
RefSeq - XM_006501082
RefSeq Peptide - NP_598921
swissprot - Q3KP78
swissprot - Q8R4F0
swissprot - D3YZE2
Ensembl - ENSMUSG00000036853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LO017850.1ENSDARG00000102050Danio rerio
 mcoln3aENSDARG00000078363Danio rerio
 MCOLN3ENSGALG00000008709Gallus gallus
 MCOLN3ENSG00000055732Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Mcoln1 / Q99J21 / Mucolipin-1 / Q9GZU1*ENSMUSG0000000456756
Mcoln2 / Q8K595 / Mucolipin-2 / Q8IZK6*ENSMUSG0000001100852


Protein motifs (from Interpro)
Interpro ID Name
 IPR013122  Polycystin cation channel, PKD1/PKD2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007626 locomotory behavior IMP
 biological_processGO:0042491 inner ear auditory receptor cell differentiation IMP
 cellular_componentGO:0000421 autophagosome membrane IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060171 stereocilium membrane IEA
 molecular_functionGO:0008289 lipid binding IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000048 abnormal stria vascularis "anomalous structure of the layer of highly vascularized pigmented granular cells on the outer wall of the cochlear duct" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0000371 diluted coat color "a coat color that appears lighter in intensity or paler than normal" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: B6C3Fe-a/a Hoxa13Hd Mcoln3Va-J/J

 MP:0000373 belly spot "the appearance of a round area of white fur on the belly" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Casp8tm1Hed/Casp8tm1Hed,Cd19tm1(cre)Cgn/Cd19+
Genetic Background: involves: 129P2/OlaHsd

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: B6C3Fe-a/a Hoxa13Hd Mcoln3Va-J/J

 MP:0000421 mottled coat "coat has spots, streaks, and/or blotches of a different color" [J:17194]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: B6C3Fe-a/a Hoxa13Hd Mcoln3Va-J/J

 MP:0001265 reduced body size "smaller than average body weight, height and/or length of an organism compared to controls" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:23170]
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Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0001386 abnormal maternal nurturing "failure of mothers to tend offspring" [J:39801]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0001394 circling "repeated, compulsive movement in a circle; often associated with inner ear defects" [MGI:CLS, J:61295]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0001399 hyperactivity "general restlessness or excessive movement; more frequent movement from one place to another" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409, J:57125]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0001401 jumpy "marked by fitful, jerky movements" [J:22295]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0001405 impaired coordination "reduced ability to execute integrated movements of muscle" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0001408 stereotypic behavior "repetitive, invariant, perseverative motor patterns that do not appear to be purposeful" [What s wrong with my mouse?:ISBN 0-471-31639-3]
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Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0001522 impaired swimming "reduced ability or inability to swim" [J:45446, J:39081]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0001523 impaired righting response "reduced ability or greater amount of time needed to recover from supine position" [J:25565]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0001921 reduced fertility "diminished ability to produce live offspring" [J:65030]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0001967 deafness "inability to hear" [J:57651]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0002622 abnormal cochlear hair cell morphology "malformation of the sensory epithelial cells of the cochlea; these cells are in synaptic contact with the auditory nerve" [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0002826 tonic seizures "increased number or decreased threshold for the induction of a seizure characterized by muscle rigidity" [hdene:Howard Dene , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0002856 abnormal vestibular ganglion morphology "malformation of the group of neurons associated with the vestibular part of the eighth cranial nerve that are involved in equilibration" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0002857 cochlear ganglion degeneration "loss of neural cell bodies in the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0002938 white spotting "the appearance of patches of white fur" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0002939 head spot "the appearance of a round area of white fur on the head" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: B6C3Fe-a/a Hoxa13Hd Mcoln3Va-J/J

 MP:0003150 detached tectorial membrane "tectorial membrane is abnormally detached from the cochlear epithelium or spiral limbus" [anna:Anna Anagnostopoulos, Mouse Genome Informatics Curator, J:77634]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0003312 abnormal locomotor coordination "reduced ability of an animal to maintain skillful and effective interaction of movements while engaging in locomotor activity" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0003703 abnormal vestibulocochlear ganglion morphology "malformed group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia" [smb:Susan M Bello, Mouse Genome Informatics Curator]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0004249 abnormal crista ampullaris morphology "anomaly in the elevation found on the inner surface of the ampullae of each semicircular duct; filaments of the vestibular nerve pass through the crista to reach hair cells on its surface; the hair cells are capped by the cupula, a gelatinous protein-polysaccharide mass" [J:60193, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0004362 cochlear hair cell degeneration "degeneration or loss of the sensory epithelial cells of the cochlea; these cells are in synaptic contact with the auditory nerve" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0004591 enlarged tectorial membrane "increased size of the overlaying membrane of cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Trpa1tm1Jul/Trpa1+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

 MP:0005175 non-pigmented tail tip "lack of color at the end of the tail " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:83500]
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Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: Not Specified

 MP:0005307 head tossing "compulsive flailing of the head in multiple directions" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

 MP:0005366 variegated coat color "dappled coloration of the fur; mosaic" [llw2:Linda Washburn , Mouse Genome Informatics Curator]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0009379 abnormal foot pigmentation "anomaly in the coloration of the foot" [MGI:mberry "Melissa Berry, Genetics Resources Curator"]
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Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: Not Specified

 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
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Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: involves: C57BL * C57BR

Allelic Composition: Mcoln3Va/Mcoln3Va
Genetic Background: mixed

Allelic Composition: Mcoln3Va-J/Mcoln3Va-J
Genetic Background: B6.Cg-Mcoln3Va-J

 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Mcoln3Va/Mcoln3Va-J
Genetic Background: Not Specified

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
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Allelic Composition: Otx2tm1.1Tlam/Otx2tm2(cre/ERT2)Tlam
Genetic Background: Not Specified

Allelic Composition: Mcoln3Va-J/?
Genetic Background: involves: C3HeB/FeJLe * C57BL/6J

Allelic Composition: Mcoln3Va-J/Mcoln3+
Genetic Background: B6C3Fe-a/a Hoxa13Hd Mcoln3Va-J/J

Allelic Composition: Mcoln3Va-J/?
Genetic Background: involves: A/J * C57BL/6J

Allelic Composition: Mcoln3Va-J/?
Genetic Background: involves: C57BL/6J * DBA/2J

Allelic Composition: Mcoln3Va-J/?
Genetic Background: involves: BALB/cByJ * C57BL/6J

Allelic Composition: Mcoln3Va-J/?
Genetic Background: involves: C57BL/6J * CZECHII/EiJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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