ENSMUSG00000037072


Mus musculus

Features
Gene ID: ENSMUSG00000037072
  
Biological name :Selenof
  
Synonyms : Selenof / selenoprotein F
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: H2
Gene start: 144570304
Gene end: 144597680
  
Corresponding Affymetrix probe sets: 10496629 (MoGene1.0st)   1448903_at (Mouse Genome 430 2.0 Array)   1454525_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000046910
Ensembl peptide - ENSMUSP00000142750
Ensembl peptide - ENSMUSP00000101817
NCBI entrez gene - 93684     See in Manteia.
MGI - MGI:1927947
RefSeq - NM_053102
RefSeq Peptide - NP_444332
swissprot - A0A1C7ZMY4
swissprot - A0A0R4J0K1
swissprot - A0A0G2JEF3
Ensembl - ENSMUSG00000037072
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q802F3ENSDARG00000099664Danio rerio
 SELENOFENSGALG00000006261Gallus gallus
 SELENOFENSG00000183291Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014912  Selenoprotein F/M
 IPR036249  Thioredoxin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000609 abnormal liver physiology "aberrant function of this bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

 MP:0001304 cataracts "complete or partial opacity of the lens" [J:65031]
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Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

 MP:0002840 abnormal lens fibers morphology "structural anomaly of the elongated cells of the crystalline lens of the eye" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

 MP:0003674 oxidative stress "condition characterized by an accumulation of free radical groups in the body, which creates a potentially unstable and damaging cellular environment linked to tissue damage, accelerated aging, and degenerative disease; can result from many factors, including exposure to alcohol, medications, poor nutrition, trauma, cold or toxins; may be indicated by low antioxidant levels measured in blood plasma" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

 MP:0010254 nuclear cataracts "a lens opacity located in the dense, central part of the lens" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", ISBN:978-0-8493-0864-2 "Smith R.S. et al (ed.) Systematic Evaluation of the Mouse Eye: Anatomy, Pathology, and Biomethods"]
Show

Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

 MP:0011697 vacuolated lens "fluid filled cavities are present in the cytoplasm of the transparent structure of the eye responsible for focusing light" [MGI:llw2]
Show

Allelic Composition: Capn1tm1Ahc/Capn1tm1Ahc,Capn2tm1Tcs/Capn2tm1Tcs,Casttm1Tcs/Casttm1Tcs
Genetic Background: B6.129-Capn2tm1Tcs Casttm1Tcs Capn1tm1Ahc

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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