ENSMUSG00000038172


Mus musculus

Features
Gene ID: ENSMUSG00000038172
  
Biological name :Ttc39b
  
Synonyms : Q8BYY4 / tetratricopeptide repeat domain 39B / Ttc39b
  
Possible biological names infered from orthology : Q5VTQ0
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: C3
Gene start: 83220300
Gene end: 83324255
  
Corresponding Affymetrix probe sets: 10514128 (MoGene1.0st)   10514133 (MoGene1.0st)   1440192_at (Mouse Genome 430 2.0 Array)   1452008_at (Mouse Genome 430 2.0 Array)   1452009_at (Mouse Genome 430 2.0 Array)   1453392_at (Mouse Genome 430 2.0 Array)   1458963_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099887
Ensembl peptide - ENSMUSP00000124955
Ensembl peptide - ENSMUSP00000124490
Ensembl peptide - ENSMUSP00000030205
Ensembl peptide - ENSMUSP00000040590
NCBI entrez gene - 69863     See in Manteia.
MGI - MGI:1917113
RefSeq - XM_006538239
RefSeq - XM_011250101
RefSeq - NM_027238
RefSeq - XM_006538241
RefSeq Peptide - NP_081514
swissprot - Q8BYY4
swissprot - E0CY48
swissprot - E0CX38
Ensembl - ENSMUSG00000038172
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTC39BENSGALG00000005416Gallus gallus
 Q5VTQ0ENSG00000155158Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A2ACP1 / Ttc39a / tetratricopeptide repeat domain 39A / Q5SRH9*ENSMUSG0000002855549
Ttc39d / tetratricopeptide repeat domain 39DENSMUSG0000004619641
Ttc39c / tetratricopeptide repeat domain 39C / Q8N584*ENSMUSG0000002442423


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019412  Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39
 IPR019734  Tetratricopeptide repeat
 IPR034305  Tetratricopeptide repeat protein 39B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002644 decreased circulating triglyceride level "lower than normal concentration of triacylglycerols in the blood" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
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Allelic Composition: a/a,Mregdsu/Mregdsu,Hps6ru/Hps6ru
Genetic Background: involves: C57BL/6J

 MP:0005505 increased platelet count "greater than the normal numbers of the non-nucleated cells found in the blood and involved in blood coagulation " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Tcf7tm1a(EUCOMM)Wtsi/Tcf7tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Tcf7tm1a(EUCOMM)Wtsi/Ics

 MP:0005554 decreased circulating creatinine level "less than the normal blood concentration of this product of creatine catabolism; abnormal levels indicative of renal dysfunction" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, RGD:Rat Genome Database submission]
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Allelic Composition: Tcf7tm1a(EUCOMM)Wtsi/Tcf7tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Tcf7tm1a(EUCOMM)Wtsi/Ics

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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