ENSMUSG00000038214


Mus musculus

Features
Gene ID: ENSMUSG00000038214
  
Biological name :Bend3
  
Synonyms : Bend3 / BEN domain-containing protein 3 / Q6PAL0
  
Possible biological names infered from orthology : BEN domain containing 3 / Q5T5X7
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: B2
Gene start: 43478831
Gene end: 43515396
  
Corresponding Affymetrix probe sets: 10362886 (MoGene1.0st)   1434570_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000149839
Ensembl peptide - ENSMUSP00000150624
Ensembl peptide - ENSMUSP00000047251
Ensembl peptide - ENSMUSP00000127351
NCBI entrez gene - 331623     See in Manteia.
MGI - MGI:2677212
RefSeq - XM_006512769
RefSeq - XM_006512770
RefSeq - XM_006512771
RefSeq - NM_199028
RefSeq Peptide - NP_950193
swissprot - Q6PAL0
swissprot - A0A1L1SSB5
swissprot - A0A1L1SU50
Ensembl - ENSMUSG00000038214
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bend3ENSDARG00000076903Danio rerio
 BEND3ENSGALG00000015314Gallus gallus
 BEND3ENSG00000178409Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR018379  BEN domain
 IPR033583  BEN domain-containing protein 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISS
 biological_processGO:0000183 chromatin silencing at rDNA ISS
 biological_processGO:0006306 DNA methylation ISO
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0034773 histone H4-K20 trimethylation ISS
 biological_processGO:0036124 histone H3-K9 trimethylation ISS
 biological_processGO:0043967 histone H4 acetylation ISO
 biological_processGO:0051260 protein homooligomerization ISS
 biological_processGO:0080182 histone H3-K4 trimethylation ISO
 biological_processGO:0098532 histone H3-K27 trimethylation ISO
 biological_processGO:1903580 positive regulation of ATP metabolic process ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005720 nuclear heterochromatin ISS
 cellular_componentGO:0005730 nucleolus ISS
 molecular_functionGO:0000182 rDNA binding ISO
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001488 increased startle reflex "reduced threshold or more severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [What s Wrong With My Mouse?:ISBN 0-471-31639-3, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Aspatm1b(EUCOMM)Wtsi/Aspatm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Aspatm1b(EUCOMM)Wtsi/Ieg

 MP:0002075 abnormal coat color "irregular or unusual pigmentation pattern of the hair in relation to control animals" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Aspatm1b(EUCOMM)Wtsi/Aspatm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Aspatm1b(EUCOMM)Wtsi/Ieg

 MP:0002591 decreased mean corpuscular volume "less than the average amount of space occupied by each red blood cell, calculated from the hematocrit and red cell count, in erythrocyte indices" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Aspatm1b(EUCOMM)Wtsi/Aspatm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Aspatm1b(EUCOMM)Wtsi/Ieg

 MP:0005566 decreased blood urea nitrogen level "low circulating concentration of nitrogen, in the form of urea; commonly used to measure renal function" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Aspatm1b(EUCOMM)Wtsi/Aspatm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Aspatm1b(EUCOMM)Wtsi/Ieg

 MP:0009142 decreased prepulse inhibition "decrease in the ability of a relatively mild stimulus to suppress the response to a strong, startle-eliciting stimulus" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Aspatm1b(EUCOMM)Wtsi/Aspatm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Aspatm1b(EUCOMM)Wtsi/Ieg

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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