ENSMUSG00000038550


Mus musculus

Features
Gene ID: ENSMUSG00000038550
  
Biological name :Ciart
  
Synonyms : Ciart / Circadian-associated transcriptional repressor / Q3TQ03
  
Possible biological names infered from orthology : circadian associated repressor of transcription / Q8N365
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.1
Gene start: 95878503
Gene end: 95882251
  
Corresponding Affymetrix probe sets: 10373452 (MoGene1.0st)   10500272 (MoGene1.0st)   1435188_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000135072
Ensembl peptide - ENSMUSP00000124943
Ensembl peptide - ENSMUSP00000135522
Ensembl peptide - ENSMUSP00000049308
Ensembl peptide - ENSMUSP00000124125
Ensembl peptide - ENSMUSP00000124831
NCBI entrez gene - 229599     See in Manteia.
MGI - MGI:2684975
RefSeq - XM_011240094
RefSeq - NM_001033302
RefSeq - XM_006501374
RefSeq - XM_006501375
RefSeq Peptide - NP_001028474
swissprot - A2RTE4
swissprot - E0CYK0
swissprot - F6U6T6
swissprot - H3BJP8
swissprot - H3BKT8
swissprot - Q3TQ03
Ensembl - ENSMUSG00000038550
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ciartaENSDARG00000058094Danio rerio
 CIARTENSG00000159208Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR031373  Circadian-associated transcriptional repressor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0032922 circadian regulation of gene expression IEA
 biological_processGO:0045475 locomotor rhythm IMP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0070888 E-box binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001745 increased circulating corticosterone level "greater than the normal concentration of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:cls, J:54931]
Show

Allelic Composition: Foxh1b2b2662Clo/Foxh1b2b2662Clo
Genetic Background: C57BL/6J-Foxh1b2b2662Clo

 MP:0001764 abnormal homeostasis "anomaly in the state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Bcl2l11tm6.1Boui/Bcl2l11tm6.1Boui,Foxp3tm4(YFP/icre)Ayr/Foxp3+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * SJL

Allelic Composition: Ciarttm1e(KOMP)Wtsi/Ciarttm1e(KOMP)Wtsi,Cry1tm1Asn/Cry1tm1Asn
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0020469 prolonged circadian behavior period "increase in the cycle length of a behavior expressed when exposed to constant conditions without temporal cues" [MGI:smb]
Show

Allelic Composition: Myocdtm1(cre)Dzw/Myocdtm1(cre)Dzw
Genetic Background: involves: 129 * C57BL/6

Allelic Composition: Ciarttm1a(KOMP)Wtsi/Ciart+
Genetic Background: involves: C57BL/6 * C57BL/6N

Allelic Composition: CiartGt(IST11761C7)Tigm/CiartGt(IST11761C7)Tigm
Genetic Background: C57BL/6-CiartGt(IST11761C7)Tigm

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr