ENSMUSG00000038932


Mus musculus

Features
Gene ID: ENSMUSG00000038932
  
Biological name :Tcfl5
  
Synonyms : Tcfl5 / transcription factor like 5
  
Possible biological names infered from orthology : Q9UL49
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: H4
Gene start: 180621956
Gene end: 180642708
  
Corresponding Affymetrix probe sets: 10490502 (MoGene1.0st)   1456515_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000040611
Ensembl peptide - ENSMUSP00000125945
NCBI entrez gene - 277353     See in Manteia.
MGI - MGI:2672878
RefSeq - XM_017318947
RefSeq - NM_178254
RefSeq - XM_006500652
RefSeq Peptide - NP_839985
swissprot - Q32NY8
swissprot - E9Q5K1
Ensembl - ENSMUSG00000038932
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCFL5ENSGALG00000045499Gallus gallus
 TCFL5ENSG00000101190Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISO
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0045595 regulation of cell differentiation IEA
 cellular_componentGO:0001673 male germ cell nucleus IDA
 cellular_componentGO:0005634 nucleus ISO
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding ISO
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding ISO
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr