ENSMUSG00000040720


Mus musculus

Features
Gene ID: ENSMUSG00000040720
  
Biological name :Virma
  
Synonyms : A2AIV2 / vir like m6A methyltransferase associated / Virma
  
Possible biological names infered from orthology : Q69YN4
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: A1
Gene start: 11485958
Gene end: 11550684
  
Corresponding Affymetrix probe sets: 10503283 (MoGene1.0st)   10503303 (MoGene1.0st)   10503305 (MoGene1.0st)   1427906_at (Mouse Genome 430 2.0 Array)   1427907_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000063188
Ensembl peptide - ENSMUSP00000103943
Ensembl peptide - ENSMUSP00000058078
NCBI entrez gene - 66185     See in Manteia.
MGI - MGI:1913435
RefSeq - NM_001347055
RefSeq - NM_001081183
RefSeq - XM_006538160
RefSeq Peptide - NP_001074652
RefSeq Peptide - NP_001333984
swissprot - E9PZY8
swissprot - A2AIV2
Ensembl - ENSMUSG00000040720
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 virmaENSDARG00000075824Danio rerio
 VIRMAENSGALG00000031131Gallus gallus
 VIRMAENSG00000164944Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR026736  Protein virilizer
 IPR031801  Virilizer, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0080009 mRNA methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0036396 RNA N6-methyladenosine methyltransferase complex IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003345 decreased number of ribs "fewer than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, ncbi:Matthew Mailman, NCBI request]
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Allelic Composition: Gt(ROSA)26Sorem1(CAG-cas9*,-EGFP)Rsky/Gt(ROSA)26Sor+
Genetic Background: C57BL/6N-Gt(ROSA)26Sorem1(CAG-cas9*,-EGFP)Rsky

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Mbpshi-mld/Mbpshi-mld
Genetic Background: MDB/Dt

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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