ENSMUSG00000042709


Mus musculus

Features
Gene ID: ENSMUSG00000042709
  
Biological name :Atpaf2
  
Synonyms : Atpaf2 / ATP synthase mitochondrial F1 complex assembly factor 2
  
Possible biological names infered from orthology : Q8N5M1
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B2
Gene start: 60400626
Gene end: 60418457
  
Corresponding Affymetrix probe sets: 10386518 (MoGene1.0st)   1426474_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000104361
Ensembl peptide - ENSMUSP00000135761
NCBI entrez gene - 246782     See in Manteia.
MGI - MGI:2180561
RefSeq - XM_017314556
RefSeq - XM_011249024
RefSeq - XM_011249025
RefSeq - XM_011249026
RefSeq - NM_145427
RefSeq - XM_006533343
RefSeq - XM_006533344
RefSeq - XM_006533345
RefSeq - XM_006533346
RefSeq Peptide - NP_663402
swissprot - H3BLF0
swissprot - A0A0R4J1C5
Ensembl - ENSMUSG00000042709
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atpaf2ENSDARG00000056270Danio rerio
 ATPAF2ENSGALG00000004926Gallus gallus
 ATPAF2ENSG00000171953Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011419  ATP12, ATP synthase F1-assembly protein
 IPR023335  ATP12 orthogonal Bundle domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043461 proton-transporting ATP synthase complex assembly IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000137 abnormal vertebrae morphology "malformed bony segment of the spinal column" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Asxl1tm1a(EUCOMM)Wtsi/Asxl1+
Genetic Background: B6Dnk;B6Brd;B6N-Asxl1tm1a(EUCOMM)Wtsi Tyrc-Brd/WtsiH

 MP:0000455 abnormal maxilla morphology "malformation of the upper bony framework of the mouth where the superior teeth are held" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Asxl1tm1a(EUCOMM)Wtsi/Asxl1+
Genetic Background: B6Dnk;B6Brd;B6N-Asxl1tm1a(EUCOMM)Wtsi Tyrc-Brd/WtsiH

 MP:0001262 decreased body weight "lower than normal average weight " [J:61295]
Show

Allelic Composition: Asxl1tm1a(EUCOMM)Wtsi/Asxl1+
Genetic Background: B6Dnk;B6Brd;B6N-Asxl1tm1a(EUCOMM)Wtsi Tyrc-Brd/WtsiH

 MP:0003345 decreased number of ribs "fewer than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, ncbi:Matthew Mailman, NCBI request]
Show

Allelic Composition: Asxl1tm1a(EUCOMM)Wtsi/Asxl1+
Genetic Background: B6Dnk;B6Brd;B6N-Asxl1tm1a(EUCOMM)Wtsi Tyrc-Brd/WtsiH

 MP:0004648 decreased thoracic vertebrae number "reduced number of the thirteen bony segments of the spine located anterior to the lumbar vertebrae and posterior to the cervical vertebrae" [MESH:National Library of Medicine_Medical Subject Headings]
Show

Allelic Composition: Asxl1tm1a(EUCOMM)Wtsi/Asxl1+
Genetic Background: B6Dnk;B6Brd;B6N-Asxl1tm1a(EUCOMM)Wtsi Tyrc-Brd/WtsiH

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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