ENSMUSG00000052749


Mus musculus

Features
Gene ID: ENSMUSG00000052749
  
Biological name :Trim30b
  
Synonyms : Trim30b / tripartite motif-containing 30B
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: E3
Gene start: 104355382
Gene end: 104369884
  
Corresponding Affymetrix probe sets: 10566350 (MoGene1.0st)   1444179_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000131288
Ensembl peptide - ENSMUSP00000131747
Ensembl peptide - ENSMUSP00000102444
NCBI entrez gene - 244183     See in Manteia.
NCBI entrez gene - 102640171     See in Manteia.
MGI - MGI:4821256
RefSeq - XM_006508380
RefSeq - XM_011241953
RefSeq - XM_017312449
RefSeq - NM_175648
RefSeq - XM_006508379
RefSeq Peptide - NP_783579
swissprot - Q8BY96
swissprot - D3YVI7
swissprot - E9PVL6
Ensembl - ENSMUSG00000052749
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032917  Tripartite motif-containing protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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