ENSMUSG00000054074


Mus musculus

Features
Gene ID: ENSMUSG00000054074
  
Biological name :Skida1
  
Synonyms : Q80YR3 / Skida1 / SKI/DACH domain-containing protein 1
  
Possible biological names infered from orthology : SKI/DACH domain containing 1
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: A3
Gene start: 18040676
Gene end: 18049051
  
Corresponding Affymetrix probe sets: 10480324 (MoGene1.0st)   1430580_at (Mouse Genome 430 2.0 Array)   1457642_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000068520
Ensembl peptide - ENSMUSP00000088982
Ensembl peptide - ENSMUSP00000114785
Ensembl peptide - ENSMUSP00000122112
NCBI entrez gene - 72668     See in Manteia.
MGI - MGI:1919918
RefSeq - NM_028317
RefSeq - XM_006497551
RefSeq - XM_006497552
RefSeq - XM_011238989
RefSeq Peptide - NP_082593
swissprot - Z4YN47
swissprot - Z4YLL5
swissprot - G3X9M2
swissprot - Q80YR3
Ensembl - ENSMUSG00000054074
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000017395Gallus gallus
 SKIDA1ENSG00000180592Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Epop / Q7TNS8 / Elongin BC and Polycomb repressive complex 2-associated protein / A6NHQ4*ENSMUSG0000004343910


Protein motifs (from Interpro)
Interpro ID Name
 IPR003380  SKI/SNO/DAC domain
 IPR009061  Putative DNA-binding domain superfamily
 IPR027971  Polycomb repressive complex 2-associated factor EPOP
 IPR037000  Ski-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000220 increased monocyte count "greater than normal monocyte numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

 MP:0000223 decreased monocyte count "fewer than normal monocyte numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

 MP:0000692 small spleen "decreased spleen size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

 MP:0000702 enlarged lymph nodes "lymph nodes of increased size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

 MP:0000709 enlarged thymus "increased size of thymus" [J:50053]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

Allelic Composition: Skida1tm1.1(KOMP)Wtsi/Skida1tm1.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Skida1tm1.1(KOMP)Wtsi/Ucd

 MP:0001102 small superior vagus ganglion "reduced size of the upper ganglion of the vagus nerve located at the jugular foramen" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:18984]
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Allelic Composition: Skida1tm1.1(KOMP)Wtsi/Skida1tm1.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Skida1tm1.1(KOMP)Wtsi/Ucd

 MP:0004357 long tibia "increased length of the medial and larger of the two bones of the lower leg" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

 MP:0004599 abnormal vertebral arch morphology "any structural anomaly of the dorsal part of a vertebra, consisting of a pair of pedicles, a pair of laminae, and seven processes (four articular processes, two transverse processes, and one spinous process)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0004647 decreased lumbar vertebrae number "reduced number of the six bony segments of the spine located anterior to the sacral vertebrae and posterior to the thoracic vertebrae" [MESH:National Library of Medicine_Medical Subject Headings]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0005477 increased circulating thyroxine level "greater than the normal blood concentration of the major hormone dervied from the thryoid gland; it normally affects cellular metabolism" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0005561 increased mean corpuscular hemoglobin "greater than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0005641 increased mean corpuscular hemoglobin concentration "greater than the normal Hgb/Hct; the average hemoglobin concentration in a given volume of packed red cells, calculated from the hemoglobin therein and the hematocrit, in erythrocyte indices" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:8936]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0010101 increased sacral vertebrae number "increase of any or all of the four bony segments of the spine located posterior to the lumbar vertebrae and anterior to the caudal vertebrae" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Rpgrip1ltm1a(EUCOMM)Wtsi/Rpgrip1l+
Genetic Background: C57BL/6N-Rpgrip1ltm1a(EUCOMM)Wtsi/Wtsi

 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Ralatm1a(EUCOMM)Wtsi/Ralatm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Ralatm1a(EUCOMM)Wtsi/Wtsi

Allelic Composition: Skida1tm1.1(KOMP)Wtsi/Skida1tm1.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Skida1tm1.1(KOMP)Wtsi/Ucd

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
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Allelic Composition: Shhtm1b(EUCOMM)Wtsi/Shhtm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Shhtm1b(EUCOMM)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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