ENSMUSG00000055385


Mus musculus

Features
Gene ID: ENSMUSG00000055385
  
Biological name :Rnf212
  
Synonyms : F6TQD1 / Probable E3 SUMO-protein ligase RNF212 / Rnf212
  
Possible biological names infered from orthology : Q495C1 / ring finger protein 212
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: F
Gene start: 108729290
Gene end: 108774982
  
Corresponding Affymetrix probe sets: 10532248 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000143229
Ensembl peptide - ENSMUSP00000148758
Ensembl peptide - ENSMUSP00000148512
Ensembl peptide - ENSMUSP00000143556
Ensembl peptide - ENSMUSP00000063525
Ensembl peptide - ENSMUSP00000142368
NCBI entrez gene - 671564     See in Manteia.
MGI - MGI:3645767
RefSeq - XM_006535331
RefSeq - XM_006535332
swissprot - F6TQD1
swissprot - A0A1D5RLU8
swissprot - Z4YJP7
swissprot - A0A0G2JFM4
swissprot - A0A0G2JDH3
Ensembl - ENSMUSG00000055385
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf212ENSDARG00000090319Danio rerio
 RNF212ENSGALG00000040805Gallus gallus
 Q495C1ENSG00000178222Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
D3Z423 / Rnf212b / RING finger protein 212B / A8MTL3*ENSMUSG0000011285818


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006311 meiotic gene conversion IMP
 biological_processGO:0007131 reciprocal meiotic recombination IMP
 biological_processGO:0016925 protein sumoylation TAS
 biological_processGO:0051026 chiasma assembly IMP
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000795 synaptonemal complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019789 SUMO transferase activity TAS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

 MP:0002208 abnormal germ cell morphology "anomalous structure of the germ cell, that is, any of the reproductive (generative) cells of a multicellular organism, whether they are undifferentiated or fully differentiated" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

 MP:0004852 decreased testis weight "reduced average weight of the male reproductive glands" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

 MP:0004910 decreased seminal gland weight "reduction in the weight of one or both of the two folded, sac shaped, glands that is a diverticulum of the ductus deferens" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

 MP:0005159 azoospermia "absence of living spermatozoa " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

 MP:0005169 abnormal male meiosis "malfunction in the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Idh1tm2Mak/Idh1tm2Mak,Commd10Tg(Vav1-icre)A2Kio/Commd10+
Genetic Background: involves: C57BL/6 * C57BL/10 * CBA/Ca

 MP:0008261 arrest of male meiosis "cessation of the progression of the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Sphk1tm1.1Cgh/Sphk1tm2Cgh,Sphk2tm1.1Cgh/Sphk2tm1.1Cgh,Tg(Mx1-cre)1Cgn/0
Genetic Background: involves: 129S4/SvJae * C57BL/6 * CBA

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr