ENSMUSG00000056211


Mus musculus

Features
Gene ID: ENSMUSG00000056211
  
Biological name :R3hdm1
  
Synonyms : R3hdm1 / R3H domain containing 1
  
Possible biological names infered from orthology : Q15032
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: E3
Gene start: 128103301
Gene end: 128237736
  
Corresponding Affymetrix probe sets: 10349480 (MoGene1.0st)   1433871_at (Mouse Genome 430 2.0 Array)   1439572_at (Mouse Genome 430 2.0 Array)   1440032_at (Mouse Genome 430 2.0 Array)   1457336_at (Mouse Genome 430 2.0 Array)   1458539_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000139749
Ensembl peptide - ENSMUSP00000139647
Ensembl peptide - ENSMUSP00000140175
Ensembl peptide - ENSMUSP00000141142
Ensembl peptide - ENSMUSP00000140583
Ensembl peptide - ENSMUSP00000140538
Ensembl peptide - ENSMUSP00000140209
Ensembl peptide - ENSMUSP00000043103
NCBI entrez gene - 226412     See in Manteia.
MGI - MGI:2448514
RefSeq - XM_017319914
RefSeq - XM_006529418
RefSeq - XM_006529419
RefSeq - XM_006529420
RefSeq - XM_006529421
RefSeq - XM_006529422
RefSeq - XM_006529423
RefSeq - XM_006529424
RefSeq - XM_006529426
RefSeq - XM_011247982
RefSeq - XM_017319906
RefSeq - NM_001357482
RefSeq - NM_181750
RefSeq - XM_006529417
RefSeq Peptide - NP_861415
RefSeq Peptide - NP_001344411
swissprot - A0A087WQI5
swissprot - A0A087WQF6
swissprot - A0A087WPF0
swissprot - Q80ZH9
swissprot - A0A087WP65
swissprot - E9Q9Q2
swissprot - Q3URW7
swissprot - A0A087WRE1
Ensembl - ENSMUSG00000056211
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 r3hdm1ENSDARG00000101458Danio rerio
 R3HDM1ENSGALG00000012246Gallus gallus
 Q15032ENSG00000048991Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q80TM6 / R3hdm2 / R3H domain-containing protein 2 / Q9Y2K5* / R3H domain containing 2*ENSMUSG0000002540446
Arpp21 / Q9DCB4 / cAMP-regulated phosphoprotein 21 / Q9UBL0*ENSMUSG0000003250333


Protein motifs (from Interpro)
Interpro ID Name
 IPR001374  R3H domain
 IPR024771  SUZ domain
 IPR036867  R3H domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001146 abnormal testis morphology "anomalous structure of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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