ENSMUSG00000059708


Mus musculus

Features
Gene ID: ENSMUSG00000059708
  
Biological name :Akap17b
  
Synonyms : A2A3V1 / Akap17b / A-kinase anchor protein 17B
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A3.3
Gene start: 36608314
Gene end: 36645395
  
Corresponding Affymetrix probe sets: 10604038 (MoGene1.0st)   1457265_at (Mouse Genome 430 2.0 Array)   1457686_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000052042
Ensembl peptide - ENSMUSP00000123406
NCBI entrez gene - 338351     See in Manteia.
MGI - MGI:2443758
RefSeq - XM_006541385
RefSeq - XM_006541384
RefSeq - XM_017318532
RefSeq - NM_001081956
RefSeq - XM_006541383
RefSeq Peptide - NP_001075425
swissprot - A2A3V1
swissprot - Z4YN92
Ensembl - ENSMUSG00000059708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000432 abnormal head morphology "anomalous structure or development of the portion of the body containing the brain and organs of sight, hearing, taste, and smell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0001698 reduced embryo size "smaller proportions of embryo compared to littermates" [J:61790]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0002084 abnormal developmental patterning "abnormal systematic arrangement of the developing body along an axis" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0002085 abnormal embryonic tissue morphology "structural abnormality or development of any embryonic tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0003400 kinked neural tube "twists or kinks in the embryonic neural tube" [J:66514, anna:Anna Anagnostopoulos, Mouse Genome Informatics Curator]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0003984 embryonic growth retardation "slow or limited development before birth" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0009657 failure of chorioallantoic fusion "failure to initiate and/or complete the formation of a highly vascularized extra-embryonic fetal membrane by fusion of the chorion and allantois" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0009768 impaired somite development "atypical process of somite formation with the result of fewer or none of these cell masses being formed" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

 MP:0011732 decreased somite size "reduced size of any of the segmental masses along the notochord of the developing embryo" [MGI:smb]
Show

Allelic Composition: Slc12a1urehr3/Slc12a1urehr3
Genetic Background: involves: C3HeB/FeJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr