ENSMUSG00000061882


Mus musculus

Features
Gene ID: ENSMUSG00000061882
  
Biological name :Ccdc62
  
Synonyms : Ccdc62 / Coiled-coil domain-containing protein 62 / E9PVD1
  
Possible biological names infered from orthology : coiled-coil domain containing 62 / Q6P9F0
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 123930679
Gene end: 123969895
  
Corresponding Affymetrix probe sets: 10525665 (MoGene1.0st)   1458644_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000091878
Ensembl peptide - ENSMUSP00000127483
NCBI entrez gene - 208908     See in Manteia.
MGI - MGI:2684996
RefSeq - XM_017320780
RefSeq - NM_001134767
RefSeq - XM_006530273
RefSeq - XM_006530274
RefSeq - XM_006530255
RefSeq - XM_006530256
RefSeq - XM_006530257
RefSeq - XM_006530258
RefSeq - XM_006530259
RefSeq - XM_006530260
RefSeq - XM_006530261
RefSeq - XM_006530262
RefSeq - XM_006530271
RefSeq Peptide - NP_001128239
swissprot - E9PVD1
Ensembl - ENSMUSG00000061882
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01072089.1ENSDARG00000111759Danio rerio
 CCDC62ENSG00000130783Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm43518 / CCDC62* / Q6P9F0* / coiled-coil domain containing 62*ENSMUSG0000010587518


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISO
 biological_processGO:0071392 cellular response to estradiol stimulus ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane ISO
 molecular_functionGO:0030331 estrogen receptor binding ISO
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

Allelic Composition: Ccdc62em1Jxia/Ccdc62em1Jxia
Genetic Background: C57BL/6-Ccdc62em1Jxia

 MP:0001932 abnormal spermiogenesis "failure of sperm cells to form or differentiate" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0002673 abnormal sperm count "increased or decreased numbers of spermatozoa " [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0002674 abnormal sperm motility "anomalies in the mobility of the spermatozoa" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0002675 asthenozoospermia "loss or reduction of the mobility of the spermatozoa, frequently associated with infertility" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

Allelic Composition: Ccdc62em1Jxia/Ccdc62em1Jxia
Genetic Background: C57BL/6-Ccdc62em1Jxia

 MP:0004910 decreased seminal gland weight "reduction in the weight of one or both of the two folded, sac shaped, glands that is a diverticulum of the ductus deferens" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0005578 teratozoospermia "presence of malformed spermatozoa in the semen; malformations include the physical bending of the sperm to produce kinks or bends" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, ava:Anna V. Anagnostopoulos , Mouse Genome Informatics Curator]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

Allelic Composition: Ccdc62em1Jxia/Ccdc62em1Jxia
Genetic Background: C57BL/6-Ccdc62em1Jxia

 MP:0006362 abnormal male germ cell morphology "any structural anomaly of male germ cells whether they are undifferentiated or fully differentiated" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0008839 absent acrosome "mature spermatozoa lack the cap-like structure at the anterior end of the sperm head that produces enzymes needed for egg penetration" [MESH:A05.360.490.890.820.100, MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

 MP:0009230 abnormal sperm head morphology "any structural abnormality of the head segment of the sperm cell which contains the nucleus with densely coiled chromatin fibers, and is surrounded anteriorly by the acrosome which contains enzymes used for penetrating the female egg" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

Allelic Composition: Ccdc62em1Jxia/Ccdc62em1Jxia
Genetic Background: C57BL/6-Ccdc62em1Jxia

 MP:0009831 abnormal sperm midpiece morphology "any structural abnormality of the highly organized segment of the sperm flagellum which begins at the connecting piece and is characterized by the presence of 9 outer dense fibers (ODFs) that lie outside each of the 9 outer axonemal microtubule doublets and by a sheath of mitochondria that encloses the ODFs and the axoneme; the midpiece terminates about one-fourth of the way down the sperm flagellum at the annulus, which marks the beginning of the principal piece" [PMID:14581499]
Show

Allelic Composition: Il1rntm1Yiw/Il1rntm1Yiw,Il17atm1Yiw/Il17a+
Genetic Background: involves: 129P2/OlaHsd * BALB/cA * C57BL/6J

Allelic Composition: Ccdc62em1Jxia/Ccdc62em1Jxia
Genetic Background: C57BL/6-Ccdc62em1Jxia

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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